PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.PY3ZH

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 421aa MW: 47959.8 Da PI: 10.2372

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.PY3ZH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.5	4.5e-08	13	64	38	91
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +gkr+++ + +++t+++t +C a++ ++ k g w ++k++l+H+H+++p Aradu.PY3ZH 13 QGKRKSK---ISPTEKTNPTTGLNCPARIYIHTLKdVGSWIISKVVLDHSHPCCP 64 4444444...456999*************998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-5	15	64	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.198	200	236	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	209	233	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	211	238	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MPENFTGTMP RLQGKRKSKI SPTEKTNPTT GLNCPARIYI HTLKDVGSWI ISKVVLDHSH 60 PCCPSKAEMP KQHRELSMSI RRTIENNDEA GMRSTQRSES MHSFFNKYIT RNSSLIHTII 120 SSEAGIKQRE NQMLQIFIRS YRVQPNPPSK LNAYTHAKFR EVQAQFRGKA NCITRLKNSA 180 LGYSVYKVGE QVSSSIFDKF AVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV 240 SPRYILERWS KKVKRQHTHI KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL 300 HRAYDNVMAE MEALKAKRKG TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLEKQ 360 IANTTKKKKT KVLSELMREC YIQINLFDAA SAAHSNCSQY QGQVINYQFR VPAAGDNSLG 420 V

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MPENFTGTMP RLQGKRKSKI SPTEKTNPTT GLNCPARIYI HTLKDVGSWI ISKVVLDHSH  60
PCCPSKAEMP KQHRELSMSI RRTIENNDEA GMRSTQRSES MHSFFNKYIT RNSSLIHTII  120
SSEAGIKQRE NQMLQIFIRS YRVQPNPPSK LNAYTHAKFR EVQAQFRGKA NCITRLKNSA  180
LGYSVYKVGE QVSSSIFDKF AVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV  240
SPRYILERWS KKVKRQHTHI KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL  300
HRAYDNVMAE MEALKAKRKG TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLEKQ  360
IANTTKKKKT KVLSELMREC YIQINLFDAA SAAHSNCSQY QGQVINYQFR VPAAGDNSLG  420
V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	18	RLQGKRKSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.PY3ZH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445B3W8	0.0	A0A445B3W8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-22	far-red elongated hypocotyls 3