PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.PZ509

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 498aa MW: 54758.8 Da PI: 6.6973

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.PZ509	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	136	195	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ Aradu.PZ509 136 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNT 195 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	133	193	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-32	138	194	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	140	194	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	142	178	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MSEVAKDPAI KLFGKTIPVP EIPTGSGDLT GAPALSSVDD SVDQNNTSST NSTSSSDAHE 60 LEEIDNKDTL GNKPDEKREV VPLQSSEIVN PDTASAAGEE SVSQSTEKEA MALKTSKTEE 120 EQSETSNSQD KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM 180 RNVPVGAGRR KNKNTAVHYR QITGPEGAMQ NNRKDLPNGV HHPPLMCNGT VLTFGSDAPL 240 CESMASVLNL SEKTAHNYMR NGFAKPEELR IRVPCASEEK GKDQSNKSSV SSAKLMGGTT 300 NSNSQEQSIQ NGHSFTPQIP YFPGPPWTFP WNPAQWNSSV PPPAFCPPRF AMPFYPYWGV 360 SGAWNMPWLA QPSSPYAAAT NSGPNSPTLG KHSREENMFK SNEPGGENED KQSKENHKEK 420 CLWVPKTLRI DDPEEAAKSS IWTTLGIKHD KDDSVLGEGL FKPFPSKYHE KNHPMQASPV 480 LQANPAALSR SLNFHETS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MSEVAKDPAI KLFGKTIPVP EIPTGSGDLT GAPALSSVDD SVDQNNTSST NSTSSSDAHE  60
LEEIDNKDTL GNKPDEKREV VPLQSSEIVN PDTASAAGEE SVSQSTEKEA MALKTSKTEE  120
EQSETSNSQD KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM  180
RNVPVGAGRR KNKNTAVHYR QITGPEGAMQ NNRKDLPNGV HHPPLMCNGT VLTFGSDAPL  240
CESMASVLNL SEKTAHNYMR NGFAKPEELR IRVPCASEEK GKDQSNKSSV SSAKLMGGTT  300
NSNSQEQSIQ NGHSFTPQIP YFPGPPWTFP WNPAQWNSSV PPPAFCPPRF AMPFYPYWGV  360
SGAWNMPWLA QPSSPYAAAT NSGPNSPTLG KHSREENMFK SNEPGGENED KQSKENHKEK  420
CLWVPKTLRI DDPEEAAKSS IWTTLGIKHD KDDSVLGEGL FKPFPSKYHE KNHPMQASPV  480
LQANPAALSR SLNFHETS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.PZ509

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM451633	4e-62	AM451633.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X095025.7, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015962753.1	0.0	cyclic dof factor 2
TrEMBL	A0A151TC81	0.0	A0A151TC81_CAJCA; Dof zinc finger protein DOF5.2
STRING	XP_007139523.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-106	cycling DOF factor 2