PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Q0D8B
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 366aa    MW: 40531.1 Da    PI: 7.4279
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Q0D8BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17250284135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Aradu.Q0D8B 250 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 284
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.0E-7816340IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.36244280IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-17244294IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14246281IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.0E-15246308No hitNo description
CDDcd002025.18E-14249296No hitNo description
PfamPF003201.4E-15250284IPR000679Zinc finger, GATA-type
PROSITE patternPS003440250275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
METPSFFQNN FCSQFTSDGE NHNNNNNTAV STGDNFIVED LLDFSNDDGI IANNNGVVAT  60
LDSVPGNSVS ADSSNTTVVE SCNSSSFSFS GCDPGMVADI GSRSLVDGHF SELEWLSNFV  120
EESFSSEDLQ KMQLISGMKR PNDDATSEAR KFRPEPNRKS PIFNSEVSVP AKARSKRSRV  180
PPCNWTSRLL VLSPTPTPTT SSSSEPDVMV PISTPTPVSF TIPVTGKKPA KTTGRKKEGG  240
DYGSGDGRKC LHCATDKTPQ WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTK  300
HSNSHRKVLE LRRQKEMMRA QQHHHQHQQQ FIQHHHHHQN MMFDVPTNAD DYLIHQHVGP  360
DFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Q0D8B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015971739.10.0GATA transcription factor 12-like
SwissprotP697813e-90GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A445CVT20.0A0A445CVT2_ARAHY; GATA transcription factor
STRINGcassava4.1_010069m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-91GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]