PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Q3HQI

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 340aa MW: 35995.4 Da PI: 5.5091

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Q3HQI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	72.5	5.9e-23	258	320	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL++kv++L +eN++L++el++ ++e++kl++e+ Aradu.Q3HQI 258 ERELKRQKRKQSNRESARRSRLRKQAECEELQKKVESLGNENRTLREELQRVSEECEKLTAEN 320 89**********************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	7.7E-30	1	93	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	3.3E-18	253	316	No hit	No description
Pfam	PF00170	1.2E-19	258	320	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.7E-21	258	322	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.185	260	323	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-11	261	317	No hit	No description
CDD	cd14702	1.25E-23	263	313	No hit	No description
PROSITE pattern	PS00036	0	265	280	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010629	Biological Process	negative regulation of gene expression
GO:0090342	Biological Process	regulation of cell aging
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGTGEESTAK PSKPSSTTQE IAPAPSYPDW SSSMQAYYAP GATPPPFYAS TVASAAPHPY 60 LWGGQHPLMP PYGTPVPYPA IYPPGSVYAH PSMATTPSAP QTDFVGKVPN GKDRNSAKNL 120 KGTSANNGSK AGDNGKAGSG SGNDAISQSG ESGSEGSSDD SDENANHQES ATNKKGSFDK 180 MLADGANAQN NAGTQSSGKA AVSMAATNLN IGMDLWNASS AGADATKLRN NQPAPGAVNP 240 PTIMGREVAL GEQWIQDERE LKRQKRKQSN RESARRSRLR KQAECEELQK KVESLGNENR 300 TLREELQRVS EECEKLTAEN NSIKEELERL CGPEAVASLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	280	RRSRLRK
2	274	281	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00039	PBM	Transfer from AT4G36730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Q3HQI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015964051.1	0.0	G-box-binding factor 1
Refseq	XP_015964052.1	0.0	G-box-binding factor 1
Refseq	XP_015964053.1	0.0	G-box-binding factor 1
Refseq	XP_020997803.1	0.0	G-box-binding factor 1
Refseq	XP_025698808.1	0.0	G-box-binding factor 1
Refseq	XP_025698809.1	0.0	G-box-binding factor 1
Refseq	XP_025698810.1	0.0	G-box-binding factor 1
Refseq	XP_025698811.1	0.0	G-box-binding factor 1
Swissprot	P42774	1e-107	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A444WSB1	0.0	A0A444WSB1_ARAHY; Uncharacterized protein
STRING	GLYMA11G06960.2	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5933	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	4e-98	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]