PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Q74TI
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 665aa    MW: 72541.1 Da    PI: 6.6598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Q74TIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-13492538455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  Aradu.Q74TI 492 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 538
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-5350242IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301488537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-19491553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-15491542No hitNo description
PfamPF000101.0E-10492538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18492550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-17494543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MEVGMGRVVW DDDDKATVAA VLGARALDFL VTNAVSNENL LVAVGSDETL QNKLSDLVDR  60
PNLSNFSWNY AIFWQLSQSK SGDWVLGWGD GSCREPNDAE EGGGGGVRGG ILSLRIDDEM  120
QQRMRKRVLQ KLHTTFGGSD EDNYAFGLDR VTDTEMFFLA SMYFSFPRGH GGPGKCFASG  180
KHLWLSDAMK SNSDYCVRSF LAKNAGFQTI ILVPTDLGVL ELGSVRTLPE NFELLQAIKS  240
VFSSQATTTY PMANSKPLMP LTVMSEKRDE NNNALFPGLA IGDHTHQNNN KVVEGVPKVF  300
GSAVISGRSH FREKLAVRKM EERPWVPHHQ PNGNNNANAN ANANAINFPN GPPRNGLHHG  360
SAWVGGAAVG GNSNNSNCNN HTQGGVRQAA AGGAAEIFAP RSSACNVSAE LANGGVRPQD  420
FRISSYQPQR QVQMQIDFSG ATSRPSVRPV VADSELSDVE ASCKEEQPSM ADERRPRKRG  480
RKPANGREEP LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA IAYINELQAK  540
LKMMESERER HGGSTSFREP EAMQRAAENH HGGGNADVDI EAAQDEVIVR VSCPLDSHPV  600
SRVIQTFKDA QINVIDSKLA AANDTIFHTF VIKSQQGCEQ LTKDMLIAAL SPESNSLQQL  660
SSVGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28486548264Transcription factor MYC2
5gnj_B1e-28486548264Transcription factor MYC2
5gnj_E1e-28486548264Transcription factor MYC2
5gnj_F1e-28486548264Transcription factor MYC2
5gnj_G1e-28486548264Transcription factor MYC2
5gnj_I1e-28486548264Transcription factor MYC2
5gnj_M1e-28486548264Transcription factor MYC2
5gnj_N1e-28486548264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473481RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Q74TI
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968359.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A445CPF00.0A0A445CPF0_ARAHY; Uncharacterized protein
STRINGXP_007147321.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-117bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]