PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.QIK83

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 224aa MW: 25752.4 Da PI: 9.3156

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.QIK83	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.8e-21	72	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+++Y+ ++GF++r+ + +k k ++++ + ++vC keg+r+++k++ + ++++raetrt+C+ ++ +k + +k+++ +lel+HnH l+ Aradu.QIK83 72 DFWKSYGGMMGFDIRQLYANKCKLDNSVSSFRLVCAKEGQRRPDKRD-HLTKQPRAETRTSCQVRMLLKFARdIKKYVICDLELNHNHILQ 161 69*****************************************99.99***************99989************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-16	72	160	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
YAGSIYGHYD DGVPNRDEQA KHEEDCQLIS QNIEKTQIAQ HNSTLITFSR PIIAKKIPKL 60 GMEFDTVLEA KDFWKSYGGM MGFDIRQLYA NKCKLDNSVS SFRLVCAKEG QRRPDKRDHL 120 TKQPRAETRT SCQVRMLLKF ARDIKKYVIC DLELNHNHIL QIPKTSHMMP SQRKISEVQA 180 LQIDLADEAG IRPKETHELT SLQAGGKDVL GYTKQDQKNY LRSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.QIK83

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016178496.1	1e-140	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025685391.1	1e-140	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7D7F0	1e-64	A0A2T7D7F0_9POAL; Uncharacterized protein
STRING	TRIUR3_17109-P1	7e-63	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-20	FAR1-related sequence 5