PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.QL5BR

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 465aa MW: 53739.3 Da PI: 8.8287

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.QL5BR	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.6	1.1e-19	28	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk+vGF ++++ +++ +++ +++ +C++egkr+++ + ++t++ t+ +C a++ ++++k+g w ++k+ l+H+H++ Aradu.QL5BR 28 QFYQNYAKRVGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNCPARISIRLNKEGLWIISKVCLDHSHPCD 114 6****************************************9877...999********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-17	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.0E-5	294	327	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.73	294	330	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.3E-6	305	332	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MESVLEEQNI EDVPKVGMYF GTTEDANQFY QNYAKRVGFV TKIRFTRRVG KDKVPKNQMI 60 TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEGLW IISKVCLDHS HPCDPEMAKL 120 LTRNREMTMH MCRVIERNDE AGVRPSKTYQ VLVGEAGDIY EERHRWVPIF LDNFFWAGMR 180 STQRSESMHS YFDKFINNKS LLIQFVKQYD NCLGWKEQQE REANVEDYKS IIPCATNSLI 240 EKQFQGAYTN AKFKEVQKQF RKKANCILHL MKAVSTSKVY SILEDVSTSK ERVYEVNYNA 300 ETKDITCMCQ MFESRGILCR HSLVVLGHER VREIPRRYIL DRWSKLVKRR HSDIKSSHDP 360 SLLNPKTERF DDLCSHSNSV AQFASQTKET SDILHRYLDM AMADCQKHVA NSSSNANELD 420 NLLTLEDGGK DGGKDALSIF IGGCIISIQD IKSPPYVFTK GCPTN

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MESVLEEQNI EDVPKVGMYF GTTEDANQFY QNYAKRVGFV TKIRFTRRVG KDKVPKNQMI  60
TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEGLW IISKVCLDHS HPCDPEMAKL  120
LTRNREMTMH MCRVIERNDE AGVRPSKTYQ VLVGEAGDIY EERHRWVPIF LDNFFWAGMR  180
STQRSESMHS YFDKFINNKS LLIQFVKQYD NCLGWKEQQE REANVEDYKS IIPCATNSLI  240
EKQFQGAYTN AKFKEVQKQF RKKANCILHL MKAVSTSKVY SILEDVSTSK ERVYEVNYNA  300
ETKDITCMCQ MFESRGILCR HSLVVLGHER VREIPRRYIL DRWSKLVKRR HSDIKSSHDP  360
SLLNPKTERF DDLCSHSNSV AQFASQTKET SDILHRYLDM AMADCQKHVA NSSSNANELD  420
NLLTLEDGGK DGGKDALSIF IGGCIISIQD IKSPPYVFTK GCPTN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.QL5BR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025625466.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445B541	0.0	A0A445B541_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	7e-35	far-red elongated hypocotyls 3