PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.QR8QC

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 435aa MW: 47853.3 Da PI: 7.9481

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.QR8QC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aradu.QR8QC 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	15.8	4.1e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Aradu.QR8QC 82 WKCDKCSKRYAVQSDWKAHLKTC 104 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.33E-8	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.7E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-5	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.33E-8	77	102	No hit	No description
SMART	SM00355	81	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVKKRVYVCP EPTCVHHNPS 60 RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH LKTCGTREYK CDCGTIFSRR 120 DSFITHRAFC DALTEENNKL SSTHQGLLTT GMPPSQIPLT TSSSSSDQLF ITDPPLIIPT 180 TTPFNNSIFS STTTSSSCSS STLQLSSSGF NNVILSNPSS SSSPHMSATA LLQKAAQMGA 240 TASNNSMNYS PMMQKSFSMG TTTMAGVVSG GHDAAFTNQL FQKEIVSSQL FDANTTTNSS 300 SNNDMGMYGQ MFMGTITSNN NNNGLMKISS DVEQEISDDD NNNNNNNNTI MVEASRFGGG 360 SGRDDDIATV HDFLGIGGAS SIASTATVSL HESEQQQRLV AETLNQQRLQ IMNHFHHHIP 420 HHAADSAIDK TMWDV

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVKKRVYVCP EPTCVHHNPS  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH LKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALTEENNKL SSTHQGLLTT GMPPSQIPLT TSSSSSDQLF ITDPPLIIPT  180
TTPFNNSIFS STTTSSSCSS STLQLSSSGF NNVILSNPSS SSSPHMSATA LLQKAAQMGA  240
TASNNSMNYS PMMQKSFSMG TTTMAGVVSG GHDAAFTNQL FQKEIVSSQL FDANTTTNSS  300
SNNDMGMYGQ MFMGTITSNN NNNGLMKISS DVEQEISDDD NNNNNNNNTI MVEASRFGGG  360
SGRDDDIATV HDFLGIGGAS SIASTATVSL HESEQQQRLV AETLNQQRLQ IMNHFHHHIP  420
HHAADSAIDK TMWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	78	142	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	78	142	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.QR8QC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020982077.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	3e-98	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A445CMC9	0.0	A0A445CMC9_ARAHY; Uncharacterized protein
STRING	XP_007163889.1	1e-158	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-94	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]