PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.R8T8C

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 384aa MW: 42183.7 Da PI: 7.7732

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.R8T8C	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.2e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Aradu.R8T8C 32 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 86 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	29	89	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-32	29	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	31	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	32	87	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	34	84	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-24	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MFPPKKPSTM NSHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP 60 KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSIK DASAIELQRN TASSSAMIGR 120 NMNEYAGEFG NSHMVDAIRM QIEVQRRLHE QLEVQKHLQL RIEAQGKYMQ SILEKAYQTL 180 ATENMGAVAA AATNMKGIGG GAHGIPDMGV MKDYGSPLNF TSFQDLDMYG GGGGNDQIDL 240 HQNLEKPTLD GSGFLPINEG LCLGGSNNNS NNKKRSNPYG SGNNTGKSPL IWSDDLRLQD 300 LGTASSCLGD DPLFKGEQIQ MDHRGTHEID PMAEIYDTKP VLQGADGDNK KFDASMKLER 360 PSPRRMSPMI STGTMAQGRS SPFG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MFPPKKPSTM NSHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP  60
KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSIK DASAIELQRN TASSSAMIGR  120
NMNEYAGEFG NSHMVDAIRM QIEVQRRLHE QLEVQKHLQL RIEAQGKYMQ SILEKAYQTL  180
ATENMGAVAA AATNMKGIGG GAHGIPDMGV MKDYGSPLNF TSFQDLDMYG GGGGNDQIDL  240
HQNLEKPTLD GSGFLPINEG LCLGGSNNNS NNKKRSNPYG SGNNTGKSPL IWSDDLRLQD  300
LGTASSCLGD DPLFKGEQIQ MDHRGTHEID PMAEIYDTKP VLQGADGDNK KFDASMKLER  360
PSPRRMSPMI STGTMAQGRS SPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.R8T8C

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ343457	1e-122	HQ343457.1 Lotus japonicus cultivar MG-20 IPN2 (IPN2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025669271.1	0.0	myb family transcription factor APL isoform X2
Swissprot	Q9SAK5	1e-116	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A444Y0Q4	0.0	A0A444Y0Q4_ARAHY; Uncharacterized protein
STRING	XP_007149174.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4964	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-115	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]