PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.R99HZ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HSF

Protein Properties

Length: 138aa MW: 15951.9 Da PI: 6.538

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.R99HZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	35.1	3.5e-11	26	56	45	84
STT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 45 FkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 h+n++SFvRQLn+YgF+k++ ++ + F+++ Aradu.R99HZ 26 LVHNNISSFVRQLNTYGFRKIDPDKWE---------FANE 56 56********************99844.........4433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	8.1E-4	2	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.6E-8	17	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.5E-8	24	56	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.9E-11	25	57	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
EQASWFEIRT PSPEAFFQDT SSITALVHNN ISSFVRQLNT YGFRKIDPDK WEFANEGAQA 60 PVNKYKEKEG ASATNPNTDV AGHCLEVGRF GLDEEIDRLR RDKQVLMMEL VRLRQQQQTT 120 RSYLQAMEQR LKGTEIKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269\|PubMed:18064488}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.R99HZ

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015969748.1	2e-50	heat stress transcription factor A-7a
Refseq	XP_025604683.1	2e-50	heat stress transcription factor A-7a
Refseq	XP_025604684.1	2e-50	heat stress transcription factor A-7a
Refseq	XP_025604687.1	2e-50	heat stress transcription factor A-7a
Refseq	XP_025604688.1	2e-50	heat stress transcription factor A-7a
Swissprot	Q6F388	9e-39	HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBL	A0A151RU38	6e-48	A0A151RU38_CAJCA; Heat stress transcription factor A-6b
TrEMBL	A0A371F3G0	1e-47	A0A371F3G0_MUCPR; Heat stress transcription factor A-2b (Fragment)
STRING	EMJ01795	5e-47	(Prunus persica)
STRING	XP_004493725.1	9e-47	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	4e-34	heat shock transcription factor A6B

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]