PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.R9YEA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 100aa    MW: 10277 Da    PI: 7.1906
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.R9YEAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.6e-132953125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  Aradu.R9YEA 29 CSGCRNLLLYPVGASSVCCAVCNAV 53
                 ************************9 PP
2zf-LSD147.72.6e-156892125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Aradu.R9YEA 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                 ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.7E-132656IPR005735Zinc finger, LSD1-type
PfamPF069439.8E-112953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.9E-156594IPR005735Zinc finger, LSD1-type
PfamPF069437.1E-136892IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPHTPPSA NGQQSQLVCS GCRNLLLYPV GASSVCCAVC NAVTAVPPPG  60
TEMAQLICGG CHTLLMYIRG ATSVQCSCCH TVNLAMEGSY
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.R9YEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174851.12e-64protein LOL1 isoform X3
RefseqXP_020994965.12e-64protein LOL1 isoform X3
RefseqXP_025627318.12e-64protein LOL1 isoform X3
RefseqXP_025699461.12e-64protein LOL1 isoform X3
SwissprotQ93ZB11e-46LOL1_ARATH; Protein LOL1
TrEMBLA0A2P5C7N23e-56A0A2P5C7N2_PARAD; Zinc finger, LSD1-type
STRINGAquca_044_00148.13e-56(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3009822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.39e-30lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]