PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RB7BN
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 241aa    MW: 26813.2 Da    PI: 9.4792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RB7BNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-111952331154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +RRd+iN+++  L++l+P++      K++Ka+ L  A+eY+k L
  Aradu.RB7BN 195 QRRDKINKKLRVLKDLIPNC-----NKVDKASLLDDAIEYLKAL 233
                  7******************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.827184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11191239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12195238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-9195238No hitNo description
PfamPF000101.4E-8195233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-12195239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAEKKLELFR AGMNPTSIYA NDCSLEQIVV KEGSSSSISS SIITTKKTPS KEKDNNKHEA  60
AAAASQFSYT SLYNSSSSAA TTTFKKPRIA DSSLLNQQDF AAGKLMNFSA FLRPSMLSQN  120
NSVSREADNN KEEPFPEKQL KSVSNNNKRK VVDNGFCNEP LIEYSSVCSL GASTNNTHIY  180
SRKQDLHDST YLSEQRRDKI NKKLRVLKDL IPNCNKVDKA SLLDDAIEYL KALKLHLQST  240
I
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RB7BN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939538.11e-157transcription factor PIF3
RefseqXP_025618725.11e-157transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X1
TrEMBLA0A445BLK21e-156A0A445BLK2_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-17phytochrome interacting factor 3