PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RJH1L
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARR-B
Protein Properties Length: 603aa    MW: 68019 Da    PI: 6.2097
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RJH1LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.5e-24225278155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Aradu.RJH1L 225 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 278
                  68*******************.9*******************************8 PP
2Response_reg66.31.4e-22291531109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.................ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.................pDlillDiempgmdGlellkeireeepklpiivvtah 80 
                   vl+vdD+p+ +++l+++l+k  yee +e  +  +a  ++k  +                 +D+++ D++mp+mdG++ll++   e  +lp+i+++  
   Aradu.RJH1L  29 VLVVDDDPTWLRILEKMLKKCSYEEMNESNSTIKANSWWKVTTcclarhalhllrerkdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVD 124
                   89*****************9999999999999999999877777777778888888889***********************6644.8********* PP

                   TTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                   ge + + + ++ Ga d+l Kp+ ++el++
   Aradu.RJH1L 125 GETSRVMKGVQHGACDYLLKPIRMKELRN 153
                   **************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-2926171IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-4026190No hitNo description
SMARTSM004481.4E-2427155IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.20628159IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1929154IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.91E-2530159No hitNo description
SuperFamilySSF466894.48E-17223282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-28223283IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-21225278IPR006447Myb domain, plants
PfamPF002491.9E-7227277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
QRNQPKYFFE LTTRFSSPRR DAFPAGLRVL VVDDDPTWLR ILEKMLKKCS YEEMNESNST  60
IKANSWWKVT TCCLARHALH LLRERKDGYD IVISDVNMPD MDGFKLLEHV GLEMDLPVIM  120
MSVDGETSRV MKGVQHGACD YLLKPIRMKE LRNIWQHVFR KRIHEAREFE SFEGFESIHL  180
MRNGLEQCDD GNLFALEDMT STKKRKDADN KHDDRELIDP SSTKKARVVW SVDLHQKFVK  240
AVNQIGFDKV GPKKILDLMN VPWLTRENVA SHLQKYRLYL SRLQKENDLK SSSSIGMNPD  300
LAATDLGSFV GVQNSVSKKQ NDVSIDSCSY SEGALQLQNM ETKTHEGSSD PNGTISPPAT  360
TEKGRTMIRN FVSEKKMRKN QPFDSLEPEG NHTAVIDCSI PTQFSWNEVP EIQLKDHKPL  420
VQLEGNLSHK FPVTGKKHQI QVDHQSPSIG SIGSPSLTGE EVTACIKTKP LCADYKCEYK  480
SSVSSIGSAV DNNTFPIEPG SLMMNDPSTA PISTTNSGLK TQASNLNSIS DMEFCQRNLL  540
LDAVSLPLDD DLHFNWLHGE CSNINFSLQN IGYYDPGLIA EIPTHYYDSA ADYAVIDQGL  600
FIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17221283163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RJH1L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025622610.10.0two-component response regulator ARR11 isoform X1
TrEMBLA0A445B9K20.0A0A445B9K2_ARAHY; Two-component response regulator
STRINGXP_007163714.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-108response regulator 11