PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RM4VK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 692aa    MW: 79194.8 Da    PI: 9.2355
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RM4VKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.29.1e-26175264290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++a+tr+gC a++++k+++ +g+w+v+++++eHnHela
  Aradu.RM4VK 175 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKAVTRCGCLAEMRIKRKEgSGRWYVSRFVEEHNHELA 264
                  9****************9998.8888***************99766467888999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-23175264IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.78466499IPR007527Zinc finger, SWIM-type
SMARTSM005750.005474501IPR006564Zinc finger, PMZ-type
SuperFamilySSF577562.09E-6603641IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.107.4E-4619639IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.076622639IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MSLKKVKNDD RRSAQLKGKV KPSSPSASWR KSREVEAVMM LEACWIVDVV VIMASSSKFW  60
KDAFMWNEPL LDNWTEGNAG VSNPQLGGIV HGVGFTLSMG EGYANALHIM AAGSIMFVLL  120
FEDTMYDTRV EEDAESSDWE GMGASMLPVF LGLDGLRAED VLEMEFSSPQ EASGFYNNYS  180
RLKGFASRRG KTVRNTAGEI VRYTFVCNRQ GFREKKWLEK VDRKREHKAV TRCGCLAEMR  240
IKRKEGSGRW YVSRFVEEHN HELAYGKLVD YLRSHRKISE VEVAQLTTMR ELGISIPKIY  300
ESFAAQLGGF NLSMVNECGV REVEWVKDLY TKKHAWATAY IRGRFFAGVR TTSRCESLHA  360
KLGRFVESRY GVLEFVRNFQ RCVDFLRDTE DELDFRSWYG TPVLQTEFVE LEKSGWTMFT  420
REMFLRYRDS LKRCVRVRIC EFDDSDNPHA YTLQKYQRPE MNWKVYRDHI SNRFSCSCMR  480
MESFGIPCVH ILSVCVRLDL VEIPESLVLR RWSKAAKLEI HNHCVEQHTA DPSVTYRTRL  540
GAFSQLCKRL GRVACMSDED FKLYSNKLMS DALFLEIKYG LRPLTDNMTT ANDCGVKDPI  600
RVRTKGTGRM SQAGGSVPKT KRKCSTCGKL GHRRTRCPNG GAQPSPRNKQ SLAGRNKRKR  660
TKVPVVVPDN CPPENASQAG CDLWEQFSLA DP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428433DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RM4VK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963887.20.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015965273.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AC460.0A0A445AC46_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-24FAR1-related sequence 5