PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S156I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 394aa    MW: 43580 Da    PI: 4.5673
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S156IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.1e-062262438
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 r C+++ + +   +C+ ++ +lC  C +  H        H+
  Aradu.S156I 22 RACDTCRSAPCVVYCRADSAYLCSACDDRVHAAnrvasrHE 62
                 57**************************9995555666665 PP
2zf-B_box29.61.5e-0964109342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++ + C+ +   lC +C + +H+       H +vp+
  Aradu.S156I  64 VWVCEACERAPAAFLCKADAASLCSSCDSDIHSAnplagrHHRVPI 109
                  689*****************************66899999877775 PP
3CCT69.39.6e-24325368144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R a++lRYkeK+ktRkFeKkirYesRKa+Ae+RpR+KGrF+k++
  Aradu.S156I 325 RVARVLRYKEKKKTRKFEKKIRYESRKAYAETRPRIKGRFAKRT 368
                  89****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.7E-81966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2811966IPR000315B-box-type zinc finger
CDDcd000218.71E-82266No hitNo description
PROSITE profilePS5011910.83662109IPR000315B-box-type zinc finger
PfamPF006431.3E-763109IPR000315B-box-type zinc finger
CDDcd000211.77E-765109No hitNo description
SMARTSM003365.5E-867109IPR000315B-box-type zinc finger
PfamPF062031.7E-17325367IPR010402CCT domain
PROSITE profilePS5101716.351325367IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MMREGTNINI GGSCSSPNNW SRACDTCRSA PCVVYCRADS AYLCSACDDR VHAANRVASR  60
HERVWVCEAC ERAPAAFLCK ADAASLCSSC DSDIHSANPL AGRHHRVPIL PISGCSSLIR  120
EGEQKEGEPE RENDHVFEIE GTINNQNYNH GCEMEDEECE GDDEAEAASW LLPHPMRMGG  180
NDESDGFLFC GGDGDGDGDE YLEFVDCDDD NNNNNNNQFS CLDHDQDQDM LHNYGGDHNQ  240
GNNHDSVVPV QMQQCFEFDS SKVGAGFSYN GSLSQSVSMS SMEVGVVPES TLSDVSISHS  300
KPQIGTSEQF PPMPMPSSLL TPMDRVARVL RYKEKKKTRK FEKKIRYESR KAYAETRPRI  360
KGRFAKRTDV EAEVDQMLSS TLMSEAGYGI VPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S156I
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946525.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-110COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A445B2920.0A0A445B292_ARAHY; Uncharacterized protein
STRINGGLYMA13G07030.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.13e-67CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]