PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.S1UIQ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MIKC_MADS

Protein Properties

Length: 139aa MW: 16182.9 Da PI: 10.1278

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.S1UIQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.2	7e-26	9	54	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif ++ l Aradu.S1UIQ 9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFDTKELL 54 79**************************************887766 PP
2	K-box	54.3	5.9e-19	53	126	24	98
K-box 24 LkkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 L +e+L + Rhl+Ged++sL++keL+ Le++L+k+l+ iR+kK+e+ ++ ++ + e+e++e n L++ + Aradu.S1UIQ 53 L---LEKLSgmLNMRHLKGEDITSLNYKELMALENDLDKGLNGIREKKMEVHRMFKRNGKILEEENKELNFLLQQHM 126 3...3444444466*********************************************************999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.4E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.6	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.81E-25	1	53	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-20	10	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-24	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.265	40	128	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.6E-13	62	119	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFDT KELLEKLSGM 60 LNMRHLKGED ITSLNYKELM ALENDLDKGL NGIREKKMEV HRMFKRNGKI LEEENKELNF 120 LLQQHMALEG ARNMHGQWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
1tqe_R	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
1tqe_S	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
6byy_A	5e-15	1	50	1	50	MEF2 CHIMERA
6byy_B	5e-15	1	50	1	50	MEF2 CHIMERA
6byy_C	5e-15	1	50	1	50	MEF2 CHIMERA
6byy_D	5e-15	1	50	1	50	MEF2 CHIMERA
6bz1_A	4e-15	1	50	1	50	MEF2 CHIMERA
6bz1_B	4e-15	1	50	1	50	MEF2 CHIMERA
6bz1_C	4e-15	1	50	1	50	MEF2 CHIMERA
6bz1_D	4e-15	1	50	1	50	MEF2 CHIMERA
6c9l_A	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
6c9l_B	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
6c9l_C	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
6c9l_D	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
6c9l_E	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
6c9l_F	5e-15	1	50	1	50	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.S1UIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934554.1	4e-77	floral homeotic protein PMADS 2-like
Refseq	XP_025612881.1	4e-77	floral homeotic protein PMADS 2
Swissprot	Q0HA25	1e-44	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	A0A445BT05	9e-76	A0A445BT05_ARAHY; Uncharacterized protein
STRING	XP_007137476.1	1e-69	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4355	32	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-32	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]