PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S1ZNM
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 244aa    MW: 27764.5 Da    PI: 6.514
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S1ZNMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-0860108348
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 
                       W+++E +++   +++  ++    +W+++a++++ g+t++q+++r+q +l
      Aradu.S1ZNM  60 VWSEDENKQFEIIIAECLPEemqnRWEAVAACLP-GKTPEQIQERFQELL 108
                      6999999999888887776677778*********.************875 PP
2Myb_DNA-binding422.2e-13173216347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT++E el++++ k+lG + Wk+I++   k+Rt +q+ s+ qk 
      Aradu.S1ZNM 173 HWTQQEKELFLRGYKELGRN-WKRISEDYVKTRTKEQVASHAQKI 216
                      6*****************66.**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.7E-557110IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-858109IPR009057Homeodomain-like
PfamPF002491.1E-660108IPR001005SANT/Myb domain
PROSITE profilePS500907.10861108IPR017877Myb-like domain
CDDcd001671.94E-761108No hitNo description
Gene3DG3DSA:1.10.10.607.3E-771109IPR009057Homeodomain-like
PROSITE profilePS5129417.461166221IPR017930Myb domain
SuperFamilySSF466891.72E-12166220IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-12169216IPR006447Myb domain, plants
SMARTSM007171.6E-10170219IPR001005SANT/Myb domain
PfamPF002492.5E-10173217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-9173219IPR009057Homeodomain-like
CDDcd001671.00E-7174217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSVPQPQLPL PSQLATDVPL LQFAANVGGN QPPQLQLPPL HEFPADVCGY QQPQAQPEPV  60
WSEDENKQFE IIIAECLPEE MQNRWEAVAA CLPGKTPEQI QERFQELLTD INLIHKSYSN  120
LHHTSIAPAA PPTTLERNPL SLPGTIEQNQ PANTNIIEHQ PLTKTTERKK TVHWTQQEKE  180
LFLRGYKELG RNWKRISEDY VKTRTKEQVA SHAQKILKKL AEKTEKITFV MNHRTISSSE  240
FSNG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S1ZNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025616409.11e-146uncharacterized protein LOC112708481
TrEMBLA0A444XXL41e-85A0A444XXL4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2080624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-20MYB family protein