PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.S283I

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 316aa MW: 36284.4 Da PI: 7.9022

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.S283I	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.7	2.2e-14	52	137	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 Y++YAk + Fs+r ++++k+ r ++i+++ +Cs+egk +++ + +++t+++ +C ++ ++ k g w ++k++l+H+H ++p Aradu.S283I 52 IYKDYAKAADFSTRFRSTNKK-R-NKIKNQLITCSREGKWKSKISL---TEKTNPTAGLNCPTRIYIHILKnVGAWIISKVVLHHSHRCCP 137 7*************98887.4.4599*********99887...89999**********98879************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-11	52	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.58	179	215	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.3E-4	180	212	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-4	190	217	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDDSTSDCQL NHSEVDFEFE SNEVLEPLSV VDEQLVPKVG MTLKILEDAA KIYKDYAKAA 60 DFSTRFRSTN KKRNKIKNQL ITCSREGKWK SKISLTEKTN PTAGLNCPTR IYIHILKNVG 120 AWIISKVVLH HSHRCCPTQA DMFKQHRELS MSVRRTIENS EEAVYEVGEQ VSSSIFNKFV 180 VTYDSVVAEV KCQCLLFESR GILCCHALSV LSFERVSQVS SRYILERWRK KVKRRHTHIK 240 SSHDEPLLEP RSKRFDELAF RSQNICEFAS ESEELTAILH CAYDNVMVEK ESMKAKRKGT 300 SSLSHEDANL ESVNEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.S283I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016196056.1	1e-105	protein FAR1-RELATED SEQUENCE 1-like
TrEMBL	A0A444Y6C3	0.0	A0A444Y6C3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-14	far-red elongated hypocotyls 3