PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.S2IZB

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 202aa MW: 22111.1 Da PI: 7.7671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.S2IZB	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.5	2.6e-39	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la +k Aradu.S2IZB 20 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEDQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIAK 117 6*********************************************************************************************9998 PP DUF260 99 ee 100 ++ Aradu.S2IZB 118 DR 119 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-38	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKKSGGGAIM KGYEPRSSSS CAACKFLKRR CIPNCIFAPY FRSDECKKFA KVHKVFGASN 60 VSKILVEVPE DQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMLELQ HDLAIAKDRL 120 ARYSAVAATA TADATSLITS SSSSSDNIFH FNHSQVSLPP FPEFPSSSDF NDTAAFCHAS 180 SSSSQSFPTT VVDDFIQIPY IF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	15	140	6	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	15	140	6	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.S2IZB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020983031.1	1e-148	LOB domain-containing protein 21-like
Refseq	XP_025609131.1	1e-148	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A445C5C3	1e-146	A0A445C5C3_ARAHY; Uncharacterized protein
STRING	GLYMA14G06270.1	2e-92	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	6e-64	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]