PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S6WAA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 142aa    MW: 16476.9 Da    PI: 8.9249
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S6WAAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.53.7e-0725107190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  kfY++Y+k +GFs+ ++++++    g  +k+++    e k ++ + +++k+ ++++         ++ ++++ g w ++k++ +H+H+++
  Aradu.S6WAA  25 KFYKNYSKLAGFSIEIRNTTQD---GDKIKNQLIQRGEVKIQDISYSEDKSLSRHKL----SSQDIRTHMKNVGLWTISKVVFNHSHPCC 107
                  6***************987665...66788888777777666666652333333333....344677777789**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-525107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
TRCVVDEQFV PKVGIIFKTL EETGKFYKNY SKLAGFSIEI RNTTQDGDKI KNQLIQRGEV  60
KIQDISYSED KSLSRHKLSS QDIRTHMKNV GLWTISKVVF NHSHPCCLDR VEMLKQHREL  120
SMFVCHTIET NEEAGIRPSK TY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S6WAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206076.11e-58protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AU148e-59A0A445AU14_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-07FAR1-related sequence 5