PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S8QXC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 636aa    MW: 68340.1 Da    PI: 6.2547
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S8QXCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.2e-14169207241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ +
  Aradu.S8QXC 169 KSKQCNCKNSRCLKLYCECFASGMYCDG-CNCTNCQNNVD 207
                  789*************************.********986 PP
2TCR50.83.4e-16253292140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Aradu.S8QXC 253 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 292
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-15168208IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.932169293IPR005172CRC domain
PfamPF036385.4E-11171205IPR005172CRC domain
SMARTSM011148.4E-20253294IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12256291IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MASVANAGAE ATTFFSYSQL RRRRCFCEIG LKVNGAERNG FGSSSEEIGE AVGFHSTPET  60
AADSAAAVAG TGDSANAITI TVAIAIDSAS ARATATTAAT TAAVVVFAGT AAESAAAVAS  120
SAAAKAFAGS SNSVHCAEAS GKGVQSVESP SPRSQPWHNV ELKDSTPKKS KQCNCKNSRC  180
LKLYCECFAS GMYCDGCNCT NCQNNVDNEA ARQEAVGLTL ERNPNAFRPK IASSPQETRD  240
SKEDVSEIQL VGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN FEGSNERRAS  300
FHEECNMFHI KQEANAAISG AVGSSGYGTG IAITPKKRKI QEIFSSKSSI DKTVCQTSQY  360
QQETDPIVTP STSQSTAFYV DTANTRNSGY SRSTYRSPLA DVLQPQNVKN LCSLFVVLSG  420
VAAKTNAEMR AKVGLNVDAG KFKSSIPSST QLLQDREDVR KFVCDDHKDE VDRVDIDCYN  480
RPLSPETLSL MCDEQDEVFF NNGSANRVAC NNFQSIVQKS STSDRCPDVY EEQERVVLTK  540
FWDVLRGLIT VGSIKETMCS SLAKKDGGSE EEPAANSNGA EVDIGSEKKE TPSNCVARCP  600
ISSSAIEISQ KKHAMINGND DLDLSLRFAC QFYGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-301613022132Protein lin-54 homolog
5fd3_B2e-301613022132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S8QXC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945678.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_025623801.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-127TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445B4D30.0A0A445B4D3_ARAHY; Uncharacterized protein
STRINGGLYMA04G08670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151511113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-129Tesmin/TSO1-like CXC domain-containing protein