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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.SI6GT | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 176aa MW: 20835.5 Da PI: 7.5785 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 61.8 | 2e-19 | 81 | 172 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
+fY++YAk GF r +++ + n++ +r++vC++eg+++++ + ++++r +r+ tr+ C+a+++ + + kw+vt +++ HnH+l p
Aradu.SI6GT 81 QFYKNYAKVHGFVARCDEKGYD-FNDNLNMRQMVCNREGTQRKKYLEmENRKRDHRPITRVICQARIRFHYDMkLRKWKVTAFKETHNHDLIP 172
6***************999887.7777**************99988867788889***************998799**************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 4.4E-17 | 81 | 172 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 176 aa Download sequence Send to blast |
MGSVHKNSTK SSVEFDDLNF EYSGSSEEND INISQKKGTI DEAMKMVDLG DGFGEVEKKL 60 TELTKDDIWN IEHDSVEQCV QFYKNYAKVH GFVARCDEKG YDFNDNLNMR QMVCNREGTQ 120 RKKYLEMENR KRDHRPITRV ICQARIRFHY DMKLRKWKVT AFKETHNHDL IPPKYI |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.SI6GT |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016168331.1 | 1e-124 | protein FAR1-RELATED SEQUENCE 11-like | ||||
| Refseq | XP_025635733.1 | 1e-123 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A444X7U3 | 1e-123 | A0A444X7U3_ARAHY; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G07500.1 | 2e-11 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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