PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.SMN7V
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 428aa    MW: 49232.9 Da    PI: 7.9062
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.SMN7VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.22e-1665151191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk + Fs+r+++++k+   +ei+++  +Cs+egk +++ +    +++t+++t  +C a++ ++  k  g w ++k +l+H+H+ +p
  Aradu.SMN7V  65 KFYKDYAKAACFSTRVRSTNKK--GNEIKNQLITCSREGKWKSKISL---TEKTNPTTGLNCPARIYIHTLKdVGAWIISKAVLHHSHPYCP 151
                  6****************98887..8889**************99887...899***************998879**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1365151IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.518294330IPR007527Zinc finger, SWIM-type
SMARTSM005750.0032305332IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDDSTSDCQL NHDEVDFEFE SNEVSELSCC RLDVDQEFLG PLCVVDDQFI SKVGMTFNTL  60
EDDAKFYKDY AKAACFSTRV RSTNKKGNEI KNQLITCSRE GKWKSKISLT EKTNPTTGLN  120
CPARIYIHTL KDVGAWIISK AVLHHSHPYC PTQAEMLKQH RELSMSVRRT IENNEKPRMR  180
STQRSESMHS FFNKFITRNS SLIQFVKQYD NCLGSREQAE RESDAADFHT VIPYATKSSI  240
EAQFQHVYTH QKFRKVQAQF IGKANCITRL MNSALGYSVY EVCEQVSSSI FNKFVVTYDS  300
IAAQVKCQCL LFESRGILCC HTLSVLSFER VTQVSPRYIL ERWSKKVKSS HNEPLLEPRS  360
KRFDELVFQS EELSAILHRA YDNVMVEMEE LKAKRKGSCS LSHEDANLES VNELQSPPWV  420
LTRGRPKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.SMN7V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-154protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444XYJ40.0A0A444XYJ4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-26far-red elongated hypocotyls 3