PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.SYG8A

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 509aa MW: 58360.2 Da PI: 9.069

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.SYG8A	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	9.4e-18	59	145	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.SYG8A 59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-15	59	145	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.124	296	332	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	303	329	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0013	307	334	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNKVPEVYYI RHDWPLSVVD DELVPKVGMT FTTIEDAGKF 60 YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY 120 IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE ADLYEDRHIW 180 VPIYLDHHFW AGMRSTQRSE SMHSFFNKFI TRNSSLIQEQ AERESDAADF HTVIPCATKS 240 SIEAQFQDAY THAKYRKVQA QFRGKANCIT RLKNSALGYS VYEVGEQVSS SIFNKFMVTY 300 DSVAVEVKCQ CLLFESRGIL CRHALSVLSF EQVRQVSPRY ILERWSKKVK RRHTHIKSSH 360 DEPLMEPRSK RFDQLVFRSQ NICEFASESE ELTAILHRAY DNVMAEMESL KAKRKGTSSL 420 SHEDANLESV NELQSPPRIR TRGRLKNRLC SKLDKQIANA TKKKKTKVLS EINLFDAASV 480 VHSNSSQYQG HVMNNQFRVL AAGDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFE SNKVPEVYYI RHDWPLSVVD DELVPKVGMT FTTIEDAGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE ADLYEDRHIW  180
VPIYLDHHFW AGMRSTQRSE SMHSFFNKFI TRNSSLIQEQ AERESDAADF HTVIPCATKS  240
SIEAQFQDAY THAKYRKVQA QFRGKANCIT RLKNSALGYS VYEVGEQVSS SIFNKFMVTY  300
DSVAVEVKCQ CLLFESRGIL CRHALSVLSF EQVRQVSPRY ILERWSKKVK RRHTHIKSSH  360
DEPLMEPRSK RFDQLVFRSQ NICEFASESE ELTAILHRAY DNVMAEMESL KAKRKGTSSL  420
SHEDANLESV NELQSPPRIR TRGRLKNRLC SKLDKQIANA TKKKKTKVLS EINLFDAASV  480
VHSNSSQYQG HVMNNQFRVL AAGDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.SYG8A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-29	far-red elongated hypocotyls 3