PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T0P0N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 350aa    MW: 37387.9 Da    PI: 7.0027
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T0P0NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021532.1e-471463067153
       DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklssaeskkele 101
                   CqdCGn+akkdC+++RCRtCCk rg+dC+thvkstWvp+++rr r  +  aas    a aa  a+kr r     ++++++++s++++s+a+++k+l+
  Aradu.T0P0N 146 VCQDCGNRAKKDCSYKRCRTCCKGRGYDCSTHVKSTWVPVSHRRARDMAVVAASDGGGA-AALGANKRLRAFgssQTTTTTNTSHSSTSNATTTKSLD 242
                  6*********************************************7666665554443.44455555555422233334444445555555555555 PP

       DUF702 102 tss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                   +s                +s +    c rvs++ +ge+e++Y ++v+i GhvfkG+LydqG++
  Aradu.T0P0N 243 STSchqgdhdfhfsqCSFSISDSIQVLCHRVSAIGNGEDEITYLATVHICGHVFKGFLYDQGAD 306
                  555778888888666677899999999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.5E-45146306IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.1E-25146188IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-15270304IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNMLGLRDLV FIAPTHSLHH HHQQGQTIIS QDHHHSHGHT NNNNNDNNNN NNNNLPFPPS  60
SLSVGLGIFP LITATPCMPQ DNNNNVHHDQ QHLLVGTNTT TTTTANNSYW NLKMCPEVSE  120
HDGGGGDGNN NGDGGGGSIY GPEFRVCQDC GNRAKKDCSY KRCRTCCKGR GYDCSTHVKS  180
TWVPVSHRRA RDMAVVAASD GGGAAALGAN KRLRAFGSSQ TTTTTNTSHS STSNATTTKS  240
LDSTSCHQGD HDFHFSQCSF SISDSIQVLC HRVSAIGNGE DEITYLATVH ICGHVFKGFL  300
YDQGADGKND EVPCVSVLQL GNSGKNNNNG ECSSPTPIGV PISAYPASAC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T0P0N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150393e-37AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937019.11e-178protein LATERAL ROOT PRIMORDIUM 1 isoform X1
RefseqXP_020985295.11e-178protein LATERAL ROOT PRIMORDIUM 1 isoform X1
TrEMBLA0A445C0581e-176A0A445C058_ARAHY; Uncharacterized protein
STRINGGLYMA11G21700.21e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-33Lateral root primordium (LRP) protein-related