PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T1R09
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 101aa    MW: 11627.6 Da    PI: 8.9666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T1R09genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.3e-117781893
                 --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                 +p +f + h  g++  +  + ++    + +W++ l  r +++r ++++GW++  ++ gLk gD++vF++++++  +++
  Aradu.T1R09  7 IPIEFSRVHlhGLE--G--KAKIGVNGNMRWDIVL--RFCGDRATFSAGWRNVSNDFGLKFGDVCVFEMIKDTPLSFN 78
                 78888877754332..3..4666667789******..77888899***********************9987655443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.209185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-12580IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15680IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-9680No hitNo description
PfamPF023629.3E-9679IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MILEQRIPIE FSRVHLHGLE GKAKIGVNGN MRWDIVLRFC GDRATFSAGW RNVSNDFGLK  60
FGDVCVFEMI KDTPLSFNIF LIRPKQQPIS LCHQNLPVLE R
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T1R09
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989796.12e-66uncharacterized protein LOC110277002
RefseqXP_025625941.22e-66B3 domain-containing protein REM9-like
TrEMBLA0A445B0W53e-61A0A445B0W5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1924344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.16e-11B3 family protein