PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T8DWL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 500aa    MW: 56951.8 Da    PI: 6.2053
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T8DWLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.64.2e-1889165176
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 
                  +fYn+YA++ GFs rk++++ks r g  + ++fvC ++g+r +++ +  + +r++++etr+gC a+++++ +  +g+w
  Aradu.T8DWL  89 EFYNRYARTRGFSARKNRTRKS-RVGALKLKNFVCHRQGFRPPNNYStGNLKRKPTPETRCGCSAMMEIRVDApSGRW 165
                  6*******************99.6777***************999884577999****************99888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1589165IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.014244277IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-4252279IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGQEFSHEGV NSEHTSYDQY EQEEETHEEV DVDYMDEDDT NVEPVFDYHG FNEGYNIDSL  60
EDIGMIEFWN IRDEDVCHFH FSDVDIAFEF YNRYARTRGF SARKNRTRKS RVGALKLKNF  120
VCHRQGFRPP NNYSTGNLKR KPTPETRCGC SAMMEIRVDA PSGRWWKEVQ ADLASVNGRP  180
RMQTYFQQLE RSAANVYTLS IFHIFQPILV RAASMKVINM KQTGSYVIYS IGLDQTPNEM  240
WRVFYCDIEM EFNCSCMRME SLGIPCEHIV CVLVHEDIEE LPRSLVLPRW TKTAKVGLQN  300
AVGLHWDSLM LSQRKMLHKT GGVNDADSVR DGVQVDASGA GLATNDLGHS MPRDPRKCRK  360
KGGASQSNKR KHRCGQCGME GHNRTTCRVR RGISQSEGLG NDTFDNDSDD HMNIEDDSLV  420
YDESASYNSN ENRSTGELSF LTSLINSAGS MVRVFTSLQE NAPKSVVMGS AIGVDTNFTI  480
LSQILFYQKP RVTEKEKKTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T8DWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189092.11e-176protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_016189094.11e-176protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020974546.11e-176protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YRT31e-176A0A444YRT3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1401926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.26e-17FAR1-related sequence 3