PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T8QJB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 175aa    MW: 19223.3 Da    PI: 10.5656
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T8QJBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.32.6e-15781094778
                  SSEEETTT--SS--S-STTTT-------S--- CS
          SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                   rfh lsefD++krsCr+rLa+hn+rrrk+q+
  Aradu.T8QJB  78 PRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 109
                  59***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.23822107IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.3E-1278109IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.6E-57894IPR004333Transcription factor, SBP-box
PfamPF031102.2E-879106IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLSLDPLPHH AHCGPGHGLM LVPKSEDVGR PMDFVGSRIG LNLGGRTYFS SSEDDFVSRL  60
YRRSRPAEPG STASSNSPRF HLLSEFDNGK RSCRKRLADH NRRRRKTQQP PAQDIHKSQP  120
ATNLDNVARS PPESGAQSSS SVTVAVSPPD YFRQRPYQTG SPSTTSSSLF FSSGQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T8QJB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122291e-130KF312229.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182762.15e-95squamosa promoter-binding-like protein 8
RefseqXP_025632049.15e-95squamosa promoter-binding-like protein 8 isoform X1
RefseqXP_025632051.15e-95squamosa promoter-binding-like protein 8 isoform X1
RefseqXP_025640937.15e-95squamosa promoter-binding-like protein 8 isoform X1
SwissprotQ8GXL38e-31SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A4D6MXP22e-80A0A4D6MXP2_VIGUN; Transcription factor
STRINGXP_007134545.19e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-31squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]