PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TB6GC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25568.8 Da    PI: 10.0729
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TB6GCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.5e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s
  Aradu.TB6GC  9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 59
                 569**********************************************86 PP
2K-box65.91.4e-2276170696
        K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                  g   l+++++e++ ++l+kLk+ +++L+r++R+++Ge   d++++s+++L+ Le+++ +++ kiR++K +++++ +e+ +kk ++l++ n +L  
  Aradu.TB6GC  76 GDIdLWHSHYEKMLENLKKLKDINNKLRRQIRNRIGEgslDMDDMSFQQLRTLEEDMVSAIAKIRERKFHVIRTRTETCRKKVRSLEQMNGNLLL 170
                  43359********************************77779************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-41160IPR002100Transcription factor, MADS-box
CDDcd002655.29E-38277No hitNo description
SuperFamilySSF554552.09E-35296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1782169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.385179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP  60
GLSTKKIIDQ YQKTLGDIDL WHSHYEKMLE NLKKLKDINN KLRRQIRNRI GEGSLDMDDM  120
SFQQLRTLEE DMVSAIAKIR ERKFHVIRTR TETCRKKVRS LEQMNGNLLL ELVRTLFNLM  180
LFMLLLWDEY TNTTKKEKCV IHPQFILHDE GEQESA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15162162MEF2 CHIMERA
6byy_B2e-15162162MEF2 CHIMERA
6byy_C2e-15162162MEF2 CHIMERA
6byy_D2e-15162162MEF2 CHIMERA
6bz1_A2e-15162162MEF2 CHIMERA
6bz1_B2e-15162162MEF2 CHIMERA
6bz1_C2e-15162162MEF2 CHIMERA
6bz1_D2e-15162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.TB6GC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997845.11e-139floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J22e-81TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A444Z9C51e-134A0A444Z9C5_ARAHY; Uncharacterized protein
STRINGGLYMA01G37470.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]