PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TM66X
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 308aa    MW: 34070.8 Da    PI: 6.6685
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TM66XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.5e-17207241135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C + +Tp+WR gp g+ktLCnaCG++y++ +l
  Aradu.TM66X 207 CLHCAAEQTPQWRTGPIGPKTLCNACGVRYKSGRL 241
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.8E-7917293IPR016679Transcription factor, GATA, plant
SMARTSM004012.3E-15201251IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.189201237IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.8E-14202238IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.85E-14203265No hitNo description
CDDcd002021.80E-13206253No hitNo description
PfamPF003201.4E-14207241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELPEYFIAG YFAATPDQLS SEKRHADQKP GEVFTIDDLL DFSNANTDAI TSDGFFNNTA  60
GNSTDVSVVT AVDSCNSSIS GSSFRCFAGV DPQFSEEFCV PYDDVAELEW LSNFVEESFP  120
AEEELKTLHL ISGVKPQTPQ SSSSSDARNA PLFHPETPLP AKARSKRSRA APGDWSTRVV  180
RVVKTDAEQR PAKKRDGANS EASGRKCLHC AAEQTPQWRT GPIGPKTLCN ACGVRYKSGR  240
LVPEYRPAAS PTFVSTKHSN SHRKVLELRR QKEMQHHRLI GQSSVFDISS GEDSYLIHRH  300
NCPDYRNV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.TM66X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932659.10.0GATA transcription factor 9-like
RefseqXP_025610206.10.0GATA transcription factor 9
SwissprotO826329e-82GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A445CFI80.0A0A445CFI8_ARAHY; GATA transcription factor
STRINGXP_007135644.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-71GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]