PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TMI5W
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 567aa    MW: 61736 Da    PI: 7.4629
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TMI5WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.94.2e-24195238144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e
  Aradu.TMI5W 195 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 238
                  79***************************************998 PP
2QLQ62.41.2e-21129165137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  +aFT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k
  Aradu.TMI5W 129 GAFTPSQWMELEQQALIYKYITANVPVPSHLLIPIKK 165
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-13129165IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-15130163IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.737130165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847195239IPR014977WRC domain
PfamPF088791.1E-20196238IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDLGAVGLDG LVGGSIGCSD GETKHKWYGS GLLKQERSGG GNTNNEDDDE YWRSNKVAKT  60
SMNGERNSSS SLLRSNATLF SDVSGNQQQQ QMLSFSSPYH YLPLSRNTGC HSWGSNSMHG  120
NGNGIGMRGA FTPSQWMELE QQALIYKYIT ANVPVPSHLL IPIKKALHSA GFSHFFRPSA  180
VGWAGFHLGF SNSTDPEPGR CRRTDGKKWR CSRDAVVDQK YCERHMNRGR HRSRKPVEGH  240
NGHALTGTTT SSTTKNVVPG NTPPPPPSNT LTYSSPPNTI SRMFMTTTTT NNNKESNGSE  300
RIPEAEDSLP MLPPTLELKP KENPFIIPKH QIPYQQESSR NNEFGLVTSD SLLNPSQKTT  360
TTTLTDRETD SHHSLRHFID DWPKSQTHRS ALSSWPESER TELSISIPMT TTSNDFMSST  420
SSPTNDKLTL SPLRLSRELD PIQMGLGVGN NALSDSSNSS RQANWIPITW ESSMGGPLGE  480
VLNLSTNNNN GSDNQCGKNN NSSSALNLMS DGWDNTNSPP LGSSPTGVLQ KTAFGSLSNS  540
SAGSSPRAEN KTQEGSSLCN DLLMPAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.TMI5W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935173.10.0growth-regulating factor 1
RefseqXP_025613484.10.0growth-regulating factor 1
TrEMBLA0A445BUL90.0A0A445BUL9_ARAHY; Uncharacterized protein
STRINGXP_004498953.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.18e-87growth-regulating factor 1