PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.TSI1B

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 487aa MW: 56083.6 Da PI: 9.0449

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.TSI1B	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.9	1.7e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ ++ei+++ +Cs+egk +++ ++ +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.TSI1B 51 KFYRNYAKAAGFSTRVRCTNRK--ENEIKNQLITCSREGKWKSKIST---TEKTNPTADLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6*************988776..7779**********99888...89999*********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-16	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRCTN RKENEIKNQL ITCSREGKWK SKISTTEKTN PTADLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELC MSIRRTIENN EEADLYEDRH IWVPIYLDHH 180 FWAGMRSTQR SESMHSFFNK YITRNISLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC 240 ATKSPIEAQF QDAYTHGKFR EVQAQFRGKA NCITRLKNSA LSYSIYEVGE QVSSLIFNKF 300 AVTYDSVAAE VKCQSLLFES RGILCRHALS VLSFEQVSQV SLRYILERWS KKVKRRHTHI 360 KSSHDEPLME PRSKRFDQLV FRSQNIYEFT SESEKLTAIP HRAYDNVMAE MEALKAKRKG 420 TSSLSHEDAN LESVKELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KGLSELLNTS 480 QAVYHHR

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKENEIKNQL ITCSREGKWK SKISTTEKTN PTADLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELC MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK YITRNISLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSPIEAQF QDAYTHGKFR EVQAQFRGKA NCITRLKNSA LSYSIYEVGE QVSSLIFNKF  300
AVTYDSVAAE VKCQSLLFES RGILCRHALS VLSFEQVSQV SLRYILERWS KKVKRRHTHI  360
KSSHDEPLME PRSKRFDQLV FRSQNIYEFT SESEKLTAIP HRAYDNVMAE MEALKAKRKG  420
TSSLSHEDAN LESVKELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KGLSELLNTS  480
QAVYHHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.TSI1B

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	9e-34	far-red elongated hypocotyls 3