PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.U00EF
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WOX
Protein Properties Length: 298aa    MW: 33560.9 Da    PI: 8.0054
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.U00EFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-20970257
                 T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Aradu.U00EF  9 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 70
                 58*****************8678*************************************97 PP
2Wus_type_Homeobox113.88.7e-37872265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
        Aradu.U00EF  8 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 72
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.9571IPR001356Homeobox domain
SuperFamilySSF466892.74E-11575IPR009057Homeodomain-like
SMARTSM003891.1E-5775IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-71070IPR009057Homeodomain-like
CDDcd000865.42E-71072No hitNo description
PfamPF000462.3E-171070IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNSGSRQSST RWTPTTDQIR ILKDLYYNNG VRSPSAEQIQ RISARLRQYG KIEGKNVFYW  60
FQNHKARERQ KKRFTSDSTT TTNVNNLPLP TMHRGSTINN NNNAPNCWNK PTEDITTTTT  120
FHSNKYYSNN MPSSTGKKVK KTKKIKTLLG LLVEMGNYGC GSVPMEKSFR ECTISAGGGS  180
SVGGAINHNL GWVGVDPYSS TYTAFFDKIR PEIETLEQEQ GDDNNDDEEI DDVTEIETLP  240
LFPMHGEDIH DYCSLRSNNS SSSSFNYDHH HHGFNNGGSR ASLELSLNSY GRKSPDYA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.U00EF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964247.11e-165protein WUSCHEL
RefseqXP_025703311.11e-165protein WUSCHEL-like
SwissprotQ8LL113e-70WUS_PETHY; Protein WUSCHEL
TrEMBLA0A444Z9731e-163A0A444Z973_ARAHY; Uncharacterized protein
STRINGGLYMA01G37190.21e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-38WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]