PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.U1ZNR
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 128aa    MW: 13825.6 Da    PI: 8.186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.U1ZNRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.57.3e-107796221
                 --SS-EEEEEEE--TT-SS- CS
         WRKY  2 dDgynWrKYGqKevkgsefp 21
                 +D ++WrKYGqK++kgs++p
  Aradu.U1ZNR 77 SDSWAWRKYGQKPIKGSPYP 96
                 69*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-96896IPR003657WRKY domain
SuperFamilySSF1182901.44E-77297IPR003657WRKY domain
SMARTSM007740.00376121IPR003657WRKY domain
PROSITE profilePS5081111.4637796IPR003657WRKY domain
PfamPF031061.3E-57897IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MYRRINTRPL YVADIEDQEN EPEPASEAGP ASPSSGDDTK FEAPSPKKRR EMKKRVVTIP  60
IGDVDGSKSK GESYPPSDSW AWRKYGQKPI KGSPYPSVAA VVGGAGEEKH FVQAAELKCA  120
MCGVVVGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.U1ZNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195874e-74EU019587.1 Glycine max WRKY52 (WRKY52) mRNA, complete cds.
GenBankEU3753514e-74EU375351.1 Glycine max transcription factor (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936441.11e-63probable WRKY transcription factor 69 isoform X2
RefseqXP_025614660.11e-63probable WRKY transcription factor 69 isoform X2
SwissprotQ93WV52e-30WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A444Y5R33e-62A0A444Y5R3_ARAHY; Uncharacterized protein
TrEMBLA0A445BYF53e-62A0A445BYF5_ARAHY; Uncharacterized protein
STRINGGLYMA12G33990.12e-46(Glycine max)
STRINGGLYMA13G36540.12e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-28WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]