PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.U6514
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 326aa    MW: 37125.8 Da    PI: 6.7574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.U6514genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171459148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G g+W+t ++  g   ++k+c++rw +yl
      Aradu.U6514 14 KGPWTPEEDQKLVDYIHKHGYGNWRTLPKNAG--ICGKSCRLRWTNYL 59
                     79*****************************8..9***********97 PP
2Myb_DNA-binding54.82.2e-1765109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
      Aradu.U6514  65 RGRFSLEEEETIIHLHSILGNK-WSAIASRLP-GRTDNEIKNYWNTH 109
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.796959IPR017930Myb domain
SuperFamilySSF466895.03E-2911106IPR009057Homeodomain-like
SMARTSM007171.9E-111361IPR001005SANT/Myb domain
PfamPF002492.5E-151459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221566IPR009057Homeodomain-like
CDDcd001671.85E-111659No hitNo description
PROSITE profilePS5129425.51460114IPR017930Myb domain
SMARTSM007174.0E-1664112IPR001005SANT/Myb domain
PfamPF002491.4E-1565109IPR001005SANT/Myb domain
CDDcd001675.62E-1267110No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2667114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRTPCCEKN GLKKGPWTPE EDQKLVDYIH KHGYGNWRTL PKNAGICGKS CRLRWTNYLR  60
PDIKRGRFSL EEEETIIHLH SILGNKWSAI ASRLPGRTDN EIKNYWNTHI RKRLLRMGID  120
PVTHSPRLDL LDLSSLFGSS ISHINNNMQH HLNPELLKLA TSLFSHNNNN NNNNNSLDNS  180
HNQIISSDVS LSFPQANFLE SNNNVDSPYP SNLLHHDLMN TSDYWHADNN NNIGIASTSS  240
PCYVTDQLPT SYYYNNNSNN YYSHHASLVD PPMSETSTFH SNNSSSNTYV NGNNSSTEDE  300
RESYVSTNNS VLRFEIPDML DVNAFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121145108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.U6514
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956263.10.0transcription factor MYB102
RefseqXP_015956264.10.0transcription factor MYB102
SwissprotQ9LDR81e-107MY102_ARATH; Transcription factor MYB102
TrEMBLA0A445E8G60.0A0A445E8G6_ARAHY; Uncharacterized protein
STRINGcassava4.1_028193m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-91MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]