PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.U8XKU

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 491aa MW: 54558 Da PI: 8.7913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.U8XKU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Aradu.U8XKU 6 FICEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	14.9	7.5e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Aradu.U8XKU 84 WKCDKCSKKYAVQSDWKAHLKTC 106 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.66E-8	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	5.9E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	84	49	79	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	72	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.66E-8	79	104	No hit	No description
SMART	SM00355	85	84	104	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRATT EEAMKKRVYV CPEKSCVHHN 60 PARALGDLTG IKKHYSRKHG EKKWKCDKCS KKYAVQSDWK AHLKTCGTRE YKCDCGTIFS 120 SGPKYCQLIS LKPCRRDSFI THRAFCDALT EENNRINQQG LTNGVPQNLQ NEQVSDLIAT 180 MPLSNSNASE LNSNNHNNPL RTLSQEIVPV PFKSMSIGGG IFSPTSSSSG TLFGGPKSMH 240 PLPTSSSSLQ LSSNNSTGFN YFQDSSKNLG LVSSSAHMSA TALLQKAAQM GAAASSSSIN 300 SPMMQKPFVT TMAGPDQVSG AATAMQHHNR NNPPSYDHHF NPQADQFFHK RQQEMPLIFE 360 ANNNSNDGST TNNDIGMLST MFMGSDHNTQ EVGATSLVHE RDLAEGNNQM GAPRFGVSND 420 MKTVHDFLGV GGSTSRATGN LHEPQRHHHH QQEQQRLELE ALSQQRLPLI NHFQHHIPHG 480 DSTMEKSVWD I

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRATT EEAMKKRVYV CPEKSCVHHN  60
PARALGDLTG IKKHYSRKHG EKKWKCDKCS KKYAVQSDWK AHLKTCGTRE YKCDCGTIFS  120
SGPKYCQLIS LKPCRRDSFI THRAFCDALT EENNRINQQG LTNGVPQNLQ NEQVSDLIAT  180
MPLSNSNASE LNSNNHNNPL RTLSQEIVPV PFKSMSIGGG IFSPTSSSSG TLFGGPKSMH  240
PLPTSSSSLQ LSSNNSTGFN YFQDSSKNLG LVSSSAHMSA TALLQKAAQM GAAASSSSIN  300
SPMMQKPFVT TMAGPDQVSG AATAMQHHNR NNPPSYDHHF NPQADQFFHK RQQEMPLIFE  360
ANNNSNDGST TNNDIGMLST MFMGSDHNTQ EVGATSLVHE RDLAEGNNQM GAPRFGVSND  420
MKTVHDFLGV GGSTSRATGN LHEPQRHHHH QQEQQRLELE ALSQQRLPLI NHFQHHIPHG  480
DSTMEKSVWD I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-31	80	157	3	66	Zinc finger protein JACKDAW
5b3h_F	4e-31	80	157	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.U8XKU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029149259.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1
Swissprot	Q9SCQ6	5e-90	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A445E8E6	0.0	A0A445E8E6_ARAHY; Uncharacterized protein
STRING	XP_007163889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-75	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]