PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.UC2H2

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 139aa MW: 15860 Da PI: 5.7006

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.UC2H2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.6	3.1e-11	64	138	1	79
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 kfY++YA +GFs+r+++ +++ +ei+++ +Cs e k +++ + +++ +++ +C a++ ++ k g w ++ Aradu.UC2H2 64 KFYRNYAMAAGFSTRVHRINRK--GNEIKNQLITCSSEEKWKSKISP---TEKMNPTAGLNCPARIYIHSLKeVGAWIIS 138 6*************998887..8889******999998776...8899999*********988879999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-8	64	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MDDSTSDCQV NQREVDYEFE SNEVPELLSV LDDQFLAILP LSVVDDHFVP KVRMTFTTLE 60 DAGKFYRNYA MAAGFSTRVH RINRKGNEIK NQLITCSSEE KWKSKISPTE KMNPTAGLNC 120 PARIYIHSLK EVGAWIISK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.UC2H2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-112	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020992539.1	7e-68	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997160.1	2e-68	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997362.1	8e-68	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YPX9	3e-74	A0A444YPX9_ARAHY; Uncharacterized protein
TrEMBL	A0A444ZDI5	2e-72	A0A444ZDI5_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477