PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UGS4N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 336aa    MW: 38691.4 Da    PI: 6.373
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UGS4NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.7e-21953145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 k+ien +nrq+tf kR+ng++KKA+EL vLCd++v +i fs++g+
  Aradu.UGS4N  9 KKIENITNRQITFFKRKNGLIKKAYELFVLCDVDVVLITFSPSGR 53
                 68*****************************************97 PP
2SRF-TF70.31.8e-22177221145
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                  k+ien +nrq+ fskR+ng++KKA+ELSvLCd++v +i fs++g+
  Aradu.UGS4N 177 KKIENITNRQIIFSKRKNGLIKKAYELSVLCDVDVVLITFSPSGR 221
                  68*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.114161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-27283IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-21323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-211054IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.969169229IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-26169228IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22173238IPR002100Transcription factor, MADS-box
PfamPF003194.0E-22178222IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRVKVPIKK IENITNRQIT FFKRKNGLIK KAYELFVLCD VDVVLITFSP SGRPALFSSN  60
TSFDEILERY INLPPQERQK MINKLKIEAE QICQTDHSVS CVIQKIQKEL YICKSQLEEM  120
EKRLRIFEGD PREITTLCEA EYRQHILQQT LEQVQLRKSV LEEEFNFGVS DQQVPIKKIE  180
NITNRQIIFS KRKNGLIKKA YELSVLCDVD VVLITFSPSG RPALFSSNTR WILQTRDQQS  240
HSAVVDMLST SSTLVPYTNT LQLQMNPENN SLEVCTLSPK FGQVIDINGS SWEQLYDLGN  300
GSLSIAEARE QEQLIEQYLS QFSSLDILIS DQHHQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-14177177MEF2 CHIMERA
6byy_B7e-14177177MEF2 CHIMERA
6byy_C7e-14177177MEF2 CHIMERA
6byy_D7e-14177177MEF2 CHIMERA
6bz1_A7e-14177177MEF2 CHIMERA
6bz1_B7e-14177177MEF2 CHIMERA
6bz1_C7e-14177177MEF2 CHIMERA
6bz1_D7e-14177177MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.UGS4N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165342.11e-142LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL66
SwissprotQ9LM465e-34AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A444WP381e-138A0A444WP38_ARAHY; Uncharacterized protein
STRINGGLYMA04G04641.14e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-36AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]