PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.URZ86
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 556aa    MW: 64346.2 Da    PI: 9.2255
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.URZ86genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.21.5e-1940126190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fY++YAk+vGF ++++ +++  +++  +++  +C++egkr+++ +     ++t++ t+ +C a++ ++++k+g w ++k+ l+H+H++ 
  Aradu.URZ86  40 QFYQNYAKRVGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNCPARISIRLNKEGLWIISKVCLDHSHPCD 126
                  6******************************************9877...999**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-1740126IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.73306342IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-5306339IPR007527Zinc finger, SWIM-type
SMARTSM005759.3E-6317344IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MQQFTINANQ LFDEMTKTEN IKNDVPKVGM YFGTTEDANQ FYQNYAKRVG FVTKIRFTRR  60
VGKDKVPKNQ MITCNREGKR KSRVSPIEKT NPRTNYNCPA RISIRLNKEG LWIISKVCLD  120
HSHPCDPEMA KLLTRNREMT MHMCRVIERN DEAGVRPSKT YQVLVGEAGD IYEERHRWVP  180
IFLDNFFWAG MRSTQRSESM HSYFDKFINN KSLLIQFVKQ YDNCLGWKEQ QEREADVEDY  240
KSIIPCATNS LIEKQFQGAY TNAKFKEVQK QFRKKANCIL HLMKAVSTSK VYSILEDVST  300
SKERVYEVNY NAETKDITCM CQMFESRGIL CRHSLVVLGH ERVREIPRRY ILDRWSKLVK  360
RRHSDIKSSH DPSLLNPKTE RFDDLCSHSN SVAQFASQTK ETSDILHRYL DMAMAECQKH  420
VANSSSNANE LDNLLTSEDG GKDALSIFIG GCIISIQDIK SPPYVFTKGR PTNRLGFEKD  480
KMIKKKTKAK KRKNEITEKE DNQHIGDIQS LPFNEQLQDA NYNVNEGFKS DSMGASMGGF  540
MSLLNSIHSY QFSNVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.URZ86
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025625466.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445B5410.0A0A445B541_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-35far-red elongated hypocotyls 3