PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V69Z9
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 424aa    MW: 48465.3 Da    PI: 7.1079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V69Z9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.28.8e-19126172148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l ++vkq+G++ W+ Ia+++  gR +kqc++rw+++l
      Aradu.V69Z9 126 KGQWTPEEDRKLEKLVKQHGTRKWSQIAEKLE-GRAGKQCRERWHNHL 172
                      799*****************************.*************97 PP
2Myb_DNA-binding538.2e-17179220245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+ +lv+ +++ G++ W+ Ia++++ gRt++++k++w+
      Aradu.V69Z9 179 DGWSEEEERILVETHAKVGNR-WAEIAKHIP-GRTENSIKNHWN 220
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.2121176IPR017930Myb domain
SuperFamilySSF466891.27E-30123219IPR009057Homeodomain-like
SMARTSM007174.6E-17125174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-28127180IPR009057Homeodomain-like
PfamPF139214.9E-19129186No hitNo description
CDDcd001672.34E-15129172No hitNo description
SMARTSM007176.2E-16177225IPR001005SANT/Myb domain
PROSITE profilePS5129420.382177227IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-20181225IPR009057Homeodomain-like
CDDcd001675.07E-12181223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MCRLGLPLTA IDRFLCSQQQ SQVLHNDDSV FDEDFLQTRF SNCYYGGGSN NPYYKLVWPN  60
CTTQEASIVV HHDNNQQEGF NNWLQQIPTL CHNQEDVHQA LGKTNVKVVG RNPKKASSSS  120
SVSLIKGQWT PEEDRKLEKL VKQHGTRKWS QIAEKLEGRA GKQCRERWHN HLRPDIKKDG  180
WSEEEERILV ETHAKVGNRW AEIAKHIPGR TENSIKNHWN ATKRRQNSRR KNRKPSSSTN  240
SNNNGKPQSS ILQDYIRSQT LIGTNNINAP ITTTNSTPTI TSESECDNNN PYYSSPTIIA  300
ESYDDELLFM QQLFKENNQI VNGDGVGKNP SDECGDGFVH YSNNYYYLSN PWNMHNPTTN  360
NNNNGYLDSD LYISQLMNNG VSTTSSSSSL HEAYEKNQNM DFHCSAVKKS EMDLLEFVST  420
HHQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-431242262104C-Myb DNA-Binding Domain
1msf_C9e-431242262104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V69Z9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020985117.10.0transcription factor MYB98-like
RefseqXP_025691244.10.0transcription factor MYB119-like
TrEMBLA0A445EW270.0A0A445EW27_ARAHY; Uncharacterized protein
STRINGXP_004500264.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.19e-61myb domain protein 119