PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V6MI1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 459aa    MW: 51889.8 Da    PI: 7.1057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V6MI1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.94.4e-135374561374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+c ++v++g+ e a+ lL + s lasp+gd+mqR+aayfteALa r+++ +++l +al++++     +see+  +klf+e++P++k++++++
  Aradu.V6MI1  37 LIHLLLTCGNHVAAGNVETANVLLGQSSMLASPEGDTMQRIAAYFTEALADRMLKAWPGLHRALNSTRIV--MVSEEVLTRKLFYEIFPFMKIAFVLT 132
                  689*************************************************************998886..699999******************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea++ge+++HiiD+++ + +QW+aL+q L++Rpegpp+lRiTgv++    +ke l +++ rL + Ae+l++pf+fn+ v+++le+l++e+Lrv
  Aradu.V6MI1 133 NQAIIEAMQGEKMIHIIDLNAVESAQWLALFQILSARPEGPPHLRITGVHH----KKEILDQIAYRLVEEAEKLDIPFQFNP-VVSKLESLDFEKLRV 225
                  ***************************************************....9**************************.799************ PP

         GRAS 197 kpgEalaVnlvlqlhrll.....................................................desvsleserdevLklvkslsPkvvvv 241
                  k+gEala+ ++lqlh+ll                                                     + ++s +++ +++L+++ +lsPkv+vv
  Aradu.V6MI1 226 KTGEALAIISMLQLHSLLacddegrrnphlagtsnaiprqrrqpmfqssssekdtaneyapspdssssspaSLTTSNSKHMESFLNALCGLSPKVMVV 323
                  *******************************************************************9987555566668899*************** PP

         GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                  +eq+++hn+ +++er+leal+ y+alfd+le  lpr+s er  vE++l+g+ei+n+vaceg+errerhe+l kW +r+  aGF+++pls++ + qak+
  Aradu.V6MI1 324 TEQDSNHNGLTLMERLLEALYSYAALFDCLECRLPRTSLERLRVEKMLFGEEIKNIVACEGFERRERHEKLDKWIQRFYLAGFGNMPLSYFGMLQAKR 421
                  ************************************************************************************************** PP

         GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   l+ +  dgy++ ee+g+++++W+drpL+svSaWr
  Aradu.V6MI1 422 FLQSYRCDGYKMREENGCVLICWQDRPLFSVSAWR 456
                  **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.06911436IPR005202Transcription factor GRAS
PfamPF035141.5E-13237456IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MQEEGSSSVT SLSLSPSLGS PRPMLKELRS EERGLCLIHL LLTCGNHVAA GNVETANVLL  60
GQSSMLASPE GDTMQRIAAY FTEALADRML KAWPGLHRAL NSTRIVMVSE EVLTRKLFYE  120
IFPFMKIAFV LTNQAIIEAM QGEKMIHIID LNAVESAQWL ALFQILSARP EGPPHLRITG  180
VHHKKEILDQ IAYRLVEEAE KLDIPFQFNP VVSKLESLDF EKLRVKTGEA LAIISMLQLH  240
SLLACDDEGR RNPHLAGTSN AIPRQRRQPM FQSSSSEKDT ANEYAPSPDS SSSSPASLTT  300
SNSKHMESFL NALCGLSPKV MVVTEQDSNH NGLTLMERLL EALYSYAALF DCLECRLPRT  360
SLERLRVEKM LFGEEIKNIV ACEGFERRER HEKLDKWIQR FYLAGFGNMP LSYFGMLQAK  420
RFLQSYRCDG YKMREENGCV LICWQDRPLF SVSAWRPRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-41204581380Protein SCARECROW
5b3h_D1e-41204581380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V6MI1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952740.10.0scarecrow-like protein 3
RefseqXP_020993196.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445E2J40.0A0A445E2J4_ARAHY; Uncharacterized protein
STRINGGLYMA11G10170.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]