PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.V6S85

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YB

Protein Properties

Length: 135aa MW: 14922.8 Da PI: 6.3417

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.V6S85	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	92.6	3.7e-29	1	79	17	95
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 m++++P++aki++d+ke+v+ cv efi+ vt ea+ +c e+r++++++d++wa+++lGf++y+e lk++l++ r + + Aradu.V6S85 1 MRQIVPKHAKICDDTKEIVRSCVCEFIGIVTYEANGHCDTEQRRALAAEDMIWAMSSLGFDNYAELLKAHLSHVRYIGA 79 89**********************************************************************9997765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-23	1	79	IPR009072	Histone-fold
SuperFamily	SSF47113	2.28E-17	1	76	IPR009072	Histone-fold
Pfam	PF00808	2.8E-10	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.9E-8	19	37	No hit	No description
PRINTS	PR00615	5.9E-8	38	56	No hit	No description
PRINTS	PR00615	5.9E-8	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MRQIVPKHAK ICDDTKEIVR SCVCEFIGIV TYEANGHCDT EQRRALAAED MIWAMSSLGF 60 DNYAELLKAH LSHVRYIGAE AHYTDAPQRR DKNVAPPPTP TRVGVLGGGA WSTSGDNVGG 120 SEFDPLAYLN RDKFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-24	1	75	22	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.V6S85

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016164010.1	9e-89	nuclear transcription factor Y subunit B-6-like
Refseq	XP_025667362.1	9e-89	nuclear transcription factor Y subunit B-6
TrEMBL	A0A444YFK8	2e-87	A0A444YFK8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF30322	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	4e-26	NF-YB family protein