PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VG38U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 552aa    MW: 61345.3 Da    PI: 6.4096
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VG38UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.69.2e-861404982370
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  +e L+++A+++++++l+ a+ +L+rl+++ +sp+g +p+qR+a+yf+eAL+  l++      +  +p+ +s  + ++ +  +k+fs +sPi+ fs +t
  Aradu.VG38U 140 IEELIRAADCFDTNHLHVAHVILERLNQRlRSPAGaKPLQRAAFYFKEALQGLLSG------SNRTPRFSSLVEIVHCVRTFKAFSGISPIPMFSIFT 231
                  679*************************99*****99******************9......4445555554456666677777************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  +Nqa+lea++g++ +H++Dfdi+ G+Q+++L++++a+++    +g+p lRiT+v+++e   + e + ++e+L++fA+el+++++ +++   ++e+l++
  Aradu.VG38U 232 TNQALLEAFHGSSFMHVLDFDIGLGIQYASLMKEIAEKAdslkHGSPLLRITAVVPEE--YAVESKLIRENLSQFAHELRIRVQVEFVPLCNFETLSF 327
                  **************************************9888889***********66..99999**********************8888******* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvE 286
                  ++ ++  gE++aV l+ +++r l + +s++     +L  v+++sP vvv+v+ e  ++   ++sF ++++++le+ys++++sl+a++ +  e+ + +E
  Aradu.VG38U 328 KAVKFVDGEKTAVLLSPAIFRRLGSAGSTAA----FLADVRRVSPSVVVFVDGEgwTEAaAAASFRRGVVSSLEFYSMMLESLDASMVAGGEWVRRIE 421
                  ***********************66666666....*******************543444677*********************************** PP

         GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                    ll+++i  +v  +g++       +  Wre++  aG++pv+ls++a  qa++ll+kv+ +g++v +++++lvl W++r++v++
  Aradu.VG38U 422 MLLLRPKILAAVEGAGRR-------VPPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVAT 498
                  ***********9999987.......99*****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.031113482IPR005202Transcription factor GRAS
PfamPF035143.2E-83140498IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MRVNNNTTSN PKPVESTIGL EPTSVLDLCR SPTPEKAVAA LVATAPNTQQ ECLDQLEDHV  60
LHNLDWDSIM KDLGFHEDSN PPLFKTTLPN VPDFSPSFDP HSEFPDIQTM SYNYANATAT  120
LDHLLHDTSN NSAATGFDFI EELIRAADCF DTNHLHVAHV ILERLNQRLR SPAGAKPLQR  180
AAFYFKEALQ GLLSGSNRTP RFSSLVEIVH CVRTFKAFSG ISPIPMFSIF TTNQALLEAF  240
HGSSFMHVLD FDIGLGIQYA SLMKEIAEKA DSLKHGSPLL RITAVVPEEY AVESKLIREN  300
LSQFAHELRI RVQVEFVPLC NFETLSFKAV KFVDGEKTAV LLSPAIFRRL GSAGSTAAFL  360
ADVRRVSPSV VVFVDGEGWT EAAAAASFRR GVVSSLEFYS MMLESLDASM VAGGEWVRRI  420
EMLLLRPKIL AAVEGAGRRV PPWREAFYGA GMRPVQLSQF ADFQAECLLA KVQIRGFHVA  480
KRQAELVLFW HERAMVATGS CYVNELCWLS KFEVVSFLSL YALWYGMGYF AAKVRNQSGM  540
KICSENQTGF VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-2414549625373Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VG38U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020979252.10.0scarecrow-like protein 15
SwissprotO232101e-157SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A444Z9R30.0A0A444Z9R3_ARAHY; Uncharacterized protein
STRINGXP_004509243.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-151GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]