PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VHQ7F
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 429aa    MW: 48615.2 Da    PI: 9.3038
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VHQ7FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.7e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++  ++C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.VHQ7F  51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREEKWKSKISP---TKKTNPTAGVNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************998776..8889***********99998776...999***************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198216252IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-4225249IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4227254IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDHSTSDCQL NPGKVDYEFE SNEVPEPLSV VDDELVPKIG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREEKWK SKISPTKKTN PTAGVNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN DEAAQFQDAY THAKFREVQA  180
QFRGKANCII RLKNSTLGYS VYEVVEQVSS SIFNKFAVTY DSVAAEVKCQ CLLFESRGIL  240
CRHALSVLSF EQVSQVSPRY ILERWSKKVK RRHTHIKGSH DEPLMEARSK RFDQLVFRSQ  300
NICEFASESE ELTTILHRAY DNTMAEMEAL KAKRKGTSSL SHEDANLESV NELQSPPRIR  360
TRGRPKNKLG SKLEKQIENA TKKKKTKVLS EINLFDAASA AHSNCSQYQG HVINYQFRVP  420
AAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VHQ7F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-171protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444ZUU00.0A0A444ZUU0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-15far-red elongated hypocotyls 3