PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VI444
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 597aa    MW: 68264 Da    PI: 7.105
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VI444genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.7e-30131216187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Aradu.VI444 131 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 216
                  8*************************************999*****************************98..55667*******85 PP
2trihelix44.73.6e-14429513281
     trihelix   2 WtkqevlaLiearrem.eerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                  W++ e+  L+++r em e+r+r    g+++++ We+++ km+  g+ersp++ +ekwe ++k+  k k+ e++  + +sss+c y
  Aradu.VI444 429 WQECEISRLVQLRAEMmETRFRHggdGCSEEAFWEQIATKMACFGYERSPVKLREKWETISKENNKKKRKENNSnSVRSSSSCFY 513
                  *************986267777543379**********************************99887777776625566666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.131124189IPR017877Myb-like domain
SMARTSM007170.1128191IPR001005SANT/Myb domain
PfamPF138373.3E-20131217No hitNo description
CDDcd122032.47E-20131196No hitNo description
PROSITE profilePS500905.935421489IPR017877Myb-like domain
SMARTSM007171.7425491IPR001005SANT/Myb domain
PfamPF138374.7E-12427509No hitNo description
CDDcd122033.34E-13427488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MEMEDHHHQH QQYGGITDLR QLVSNNGPRS THFPTSIPPQ PTAELFPGHP NLAAAHQQQH  60
YELMMFGRQV ADLMPRCLHD FADASNNNTS SIGVATVTTP TTTTSASTPP LSGLGGAEAA  120
GCLGGDASTG RWPRQETLTL LEIRSRLDPK FKEANQKGPL WDEVSRIMSE EHGYQRSGKK  180
CREKFENLYK YYKKTKEGKA GRQDGKHYRF FRQLEALYGE NNSNNSNAAS AQETNFGGSN  240
TLHYQNNPHA FNSQHHMNNQ EMLLLGSQNS LSLTNSTEFE TSSSDDDDHN STGGVKGNDE  300
SMEKRRKKRG GSKSWKVKIK DFIDLQMRKL VQKQEEWLDK LMKTLEQKEK ERVLREEEWR  360
RQEAARLERE HKFWAKERAW IEARDAALME ALHKLTGTDQ VKSHHHHHDG IITGSAMQNK  420
DHNEDDENWQ ECEISRLVQL RAEMMETRFR HGGDGCSEEA FWEQIATKMA CFGYERSPVK  480
LREKWETISK ENNKKKRKEN NSNSVRSSSS CFYIENNNND HYSSSSSLYN NNNNNQSGGG  540
YCDINNDQRR QQQSPSNSNA NASVHQAENC FPFLMSCEGG TFWDNYSLKV NKSNQNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VI444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150414e-50AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015970426.10.0trihelix transcription factor PTL
TrEMBLA0A444YPF90.0A0A444YPF9_ARAHY; Uncharacterized protein
STRINGGLYMA19G37660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-85Trihelix family protein