PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.VP5WD

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 354aa MW: 39985.3 Da PI: 9.5235

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.VP5WD	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	86	139	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Aradu.VP5WD 86 PRLRWTPDLHLSFVHAVQRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 139 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.316	82	142	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-29	82	140	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-14	84	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-23	86	141	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-9	87	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSEGFEIHQE NNEGSGGGKS SNDNEGEENS FDLNEGAAMM SSDEELEEEN NNEEEGNSTN 60 PSSSSTASRE GKRGSGVRQY VRSKMPRLRW TPDLHLSFVH AVQRLGGQER ATPKLVLQLM 120 NVRGLSIAHV KSHLQMYRSK KLDDSGQVVR SERQRSKHEV GGVAYETMMK RSSPHQHFKM 180 GNGGIFLTTN YTTTTTPFSS LPHSSKPTNH HLWHLNHQIP SIRRPITPPL QTQLASRITP 240 MRPSRFLEEK KWPPFHHWKF KRLPNTNNIT LPSSHSSPFA TTSDFITFGD NTTTTIRDYL 300 SNSNTFKLNH QDKQLQHKEK QWVPDLQLGL SHHKDGDNND GTGTPEISTK LSLS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSEGFEIHQE NNEGSGGGKS SNDNEGEENS FDLNEGAAMM SSDEELEEEN NNEEEGNSTN  60
PSSSSTASRE GKRGSGVRQY VRSKMPRLRW TPDLHLSFVH AVQRLGGQER ATPKLVLQLM  120
NVRGLSIAHV KSHLQMYRSK KLDDSGQVVR SERQRSKHEV GGVAYETMMK RSSPHQHFKM  180
GNGGIFLTTN YTTTTTPFSS LPHSSKPTNH HLWHLNHQIP SIRRPITPPL QTQLASRITP  240
MRPSRFLEEK KWPPFHHWKF KRLPNTNNIT LPSSHSSPFA TTSDFITFGD NTTTTIRDYL  300
SNSNTFKLNH QDKQLQHKEK QWVPDLQLGL SHHKDGDNND GTGTPEISTK LSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.VP5WD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015958155.1	0.0	transcription repressor KAN1-like
TrEMBL	A0A444ZRL3	0.0	A0A444ZRL3_ARAHY; Uncharacterized protein
STRING	GLYMA08G12320.2	4e-89	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-37	G2-like family protein