PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VRV7I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 394aa    MW: 45265.9 Da    PI: 8.8769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VRV7IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-065975522
                 --SGGGGTS--TTTTT-S CS
      zf-CCCH  5 lCrffartGtCkyGdrCk 22
                 +C f+++ G+C yG++C+
  Aradu.VRV7I 59 ICLFYQK-GYCAYGSQCR 75
                 799****.*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.32952IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.7843353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2775481IPR000571Zinc finger, CCCH-type
SMARTSM003560.00485580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.9E-10212273IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.28E-12213277No hitNo description
CDDcd001621.67E-4219273No hitNo description
SMARTSM001841.4E-6220270IPR001841Zinc finger, RING-type
PfamPF000975.9E-7220270IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.578220271IPR001841Zinc finger, RING-type
PROSITE patternPS005180244253IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010311.422300329IPR000571Zinc finger, CCCH-type
SMARTSM003560.15300328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
KRKKALCRQN TNSITLRKSF IDRFRHGHRQ KQQFYARGTC LKGELCCFSH ERNEASSDIC  60
LFYQKGYCAY GSQCRNRHVK PSQASASASA NGPVSLVSQS AMIHSAAKGK FTWVRKADTK  120
VLSPTDKHTS SLQHKNQHSQ GTHCEVGESS APAMLDENLF CEFDAANCTS RDKCTKIHGI  180
LCLYCRKPCL HPTNLEQRSN HMKICKEKAE IMKNSQDIEC SVCLERVLRK PRPSQRKFGL  240
LSECDHPFCL DCIIRWRNMA PTNAMDCPVC RKHSSFYVQS DIWYATKEEK QAIIDNYKAN  300
CKLIDCKYFK FGTRQCPHGT SCMYKHAVKP VLRKQRQTRP QPQIGGDNLN KYDIMSQLSE  360
FDLHPHEFYS ILKDMEWFDD MSAMEKMALA DELA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VRV7I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937308.10.0E3 ubiquitin-protein ligase makorin isoform X1
TrEMBLA0A445BZZ50.0A0A445BZZ5_ARAHY; Uncharacterized protein
STRINGGLYMA08G16360.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3034322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-75C3H family protein