PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VS60N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 337aa    MW: 37682.2 Da    PI: 9.0859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VS60NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20128178255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd s+   + +r++lg+f taeeAa a+++a+++++g
  Aradu.VS60N 128 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFETAEEAALAYDKAALRIRG 178
                  8********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-29127186No hitNo description
Gene3DG3DSA:3.30.730.101.6E-31127186IPR001471AP2/ERF domain
PfamPF008472.6E-14128178IPR001471AP2/ERF domain
SMARTSM003802.1E-38128192IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-23128187IPR016177DNA-binding domain
PROSITE profilePS5103223.999128186IPR001471AP2/ERF domain
PRINTSPR003674.7E-11129140IPR001471AP2/ERF domain
PRINTSPR003674.7E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDSHSNDANS EGILENVWAK IISNQRGADH VRTYGDGDVA AEQSWEELPQ LDGRDNNNNG  60
SVGILQRLPS LGRWISMGAD FWEDVLDGVV NITPNAATTT NNNEQDCNKK VELEKRVMKT  120
EKKVVTKHYR GVRRRPWGKY AAEIRDSSKK GARVWLGTFE TAEEAALAYD KAALRIRGPK  180
AYLNFPFDTV SKAIEFDHHY CNKRVSSVVL NEQPPTKKVA GGFHDHDEEV DVFVFQDLGR  240
TTQTREAPTN HSYSLSSPCR GTLRLLALPT LPLRVAHIVG SSLRSPTSAH LTVARLYGCV  300
NKERRSRGVL TIEVSNDEKS RGRGPKGRAD NMSDVRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-28127187464ATERF1
3gcc_A5e-28127187464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VS60N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943133.21e-178ethylene-responsive transcription factor ERF091-like
TrEMBLA0A445BBR11e-170A0A445BBR1_ARAHY; Uncharacterized protein
STRINGXP_007148087.12e-82(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-25ERF family protein