PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.VX49E

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Trihelix

Protein Properties

Length: 394aa MW: 44661.1 Da PI: 5.8679

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.VX49E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.1	1.6e-25	70	138	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+++Li++rrem+ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k++++ Aradu.VX49E 70 WVHEETRTLIALRREMDALFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHNDGA 138 ***************************************************************998764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-5	61	131	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.734	62	126	IPR017877	Myb-like domain
SMART	SM00717	4.2E-6	66	128	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.04E-5	66	127	IPR009057	Homeodomain-like
CDD	cd12203	4.83E-28	68	133	No hit	No description
Pfam	PF13837	8.4E-20	69	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MYLSEKPRPI DFYKEESSTR DMIIEVVSNG AADLPPPPSH QQQQMILGDS SGGEDPEVEI 60 KAPKKRAETW VHEETRTLIA LRREMDALFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD 120 KWRNLLKEFK KAKHNDGAAG GGGGGGSGSA KMSYYKEIEE ILRDRSKCVQ YKSPTPPPPP 180 PSNHKVESFM QFTDKGIEDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTAEAVTASG 240 VPPWNWRETP GNGEEGQSCC GRVISVKWGD YTRRIGIDGA SEAIKEAIRA AFRLRTKRAF 300 WLEDEDQIIR SLDRDMPLGN YTLHLDEGMA IKVCLYDESD HIPVHTEEKI FYTEDDYRDF 360 LTRRGWTSLR EFDGYRNIDN MDDLRPGAIY RGVT

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MYLSEKPRPI DFYKEESSTR DMIIEVVSNG AADLPPPPSH QQQQMILGDS SGGEDPEVEI  60
KAPKKRAETW VHEETRTLIA LRREMDALFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD  120
KWRNLLKEFK KAKHNDGAAG GGGGGGSGSA KMSYYKEIEE ILRDRSKCVQ YKSPTPPPPP  180
PSNHKVESFM QFTDKGIEDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTAEAVTASG  240
VPPWNWRETP GNGEEGQSCC GRVISVKWGD YTRRIGIDGA SEAIKEAIRA AFRLRTKRAF  300
WLEDEDQIIR SLDRDMPLGN YTLHLDEGMA IKVCLYDESD HIPVHTEEKI FYTEDDYRDF  360
LTRRGWTSLR EFDGYRNIDN MDDLRPGAIY RGVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-44	64	157	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00141	DAP	Transfer from AT1G13450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.VX49E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015957828.1	0.0	trihelix transcription factor GT-4
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A444ZS73	0.0	A0A444ZS73_ARAHY; Uncharacterized protein
STRING	XP_007163722.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]