PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.VZN92

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 375aa MW: 42289.4 Da PI: 9.043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.VZN92	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	255	282	4	31
HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 4 ahnerErrRRdriNsafeeLrellPkas 31 hn Er+RRdriN+++ L++l+P++ Aradu.VZN92 255 VHNLSERKRRDRINEKMRALQDLIPNCN 282 6*************************73 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF51197	1.03E-5	14	76	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-11	248	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-9	250	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.563	251	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-6	254	283	No hit	No description
Pfam	PF00010	4.6E-7	255	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MHDLLMTQKE KNRRCSLWPQ NPIDFSEILE AFSIKVKSMI DYLLRCMARS ALVLGLKPHT 60 YRSVITVLLQ DNEVEGRSLI LACQIHVTRM LNTHLLAAAS NAVVAAFNEL LRFGFDLKIR 120 QRSFVAAHLI AIIYLCTITS NTVVAAFYDL IFNLAHLLTS ASNAVVAAFN KLLQFGFTIS 180 VTSNSHGIVE ELIGFGARVH ACARNEAELT KEKLMDSVCS EFQGKLNILD IEEESVGVKK 240 ACPTRDVKRS RSAEVHNLSE RKRRDRINEK MRALQDLIPN CNKVHLFILS NLEPYLLLLE 300 PKMQPEKQRN ETKRQEAWQV YGALLCAVGQ CMHEKAKIFS NLLSPTRAFS RPKAMIAMSS 360 MTSLCCNEIY TGVSK

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MHDLLMTQKE KNRRCSLWPQ NPIDFSEILE AFSIKVKSMI DYLLRCMARS ALVLGLKPHT  60
YRSVITVLLQ DNEVEGRSLI LACQIHVTRM LNTHLLAAAS NAVVAAFNEL LRFGFDLKIR  120
QRSFVAAHLI AIIYLCTITS NTVVAAFYDL IFNLAHLLTS ASNAVVAAFN KLLQFGFTIS  180
VTSNSHGIVE ELIGFGARVH ACARNEAELT KEKLMDSVCS EFQGKLNILD IEEESVGVKK  240
ACPTRDVKRS RSAEVHNLSE RKRRDRINEK MRALQDLIPN CNKVHLFILS NLEPYLLLLE  300
PKMQPEKQRN ETKRQEAWQV YGALLCAVGQ CMHEKAKIFS NLLSPTRAFS RPKAMIAMSS  360
MTSLCCNEIY TGVSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	264	ERKRRD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.VZN92

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031131	3e-34	KT031131.1 Glycine max clone HN_WYQ_57 bHLH transcription factor (Glyma10g28290.3) mRNA, partial cds.
GenBank	KT031132	3e-34	KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-20	phytochrome interacting factor 3